Gene Information

Name : Amir_0844 (Amir_0844)
Accession : YP_003098651.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 927294 - 927980 bp
Length : 687 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pst:PSPTO_1307 DNA-binding heavy metal response regulator

DNA sequence : 
ATGGGAGCTGTGCCAACTGCTGCCAGGGTGCTGGTGATCGAGGACGCGGAGGCTATCGGGGCCGCGGTGGGCTCGGCCCT
GCGCGAGCAGGGCTACCAGGTGCGGGTCCGGCCCGACGGGCGTGACCTGGAAGGGGAGTTGACGAGATTTCGGCCTGACC
TCGTCGTGCTGGACGTGATGCTCCCAGGGCGTGACGGGTTCGCGCTGCTGGAGGTGATCCGGCGGGGGAGCGGGGCCGGT
GTGGTGATGCTCACGGCTCGGGACGGGGTGCAGGACCGGCTGCGCGGGCTGGACCGCGGGGCCGATGACTACGTGACGAA
GCCGTTCGTGCTCGCCGAGGTGGTGGCGCGGGTCAGTGCGGTGCTGCGGAGGTTGGGGCGCACGCCGTCGACCGTGCAGA
TCGGGGATCTGGTCGTCGACGCGGACTCGGCTGTTGTCGTGCGCGGGAACGCGCAGGTCGAGCTGACGGCCACCGAGCTG
CGGCTGCTGCGGTACCTGGCGGCGCAGCGGGGGCGGGTGGTCGGCAAGACGCAGATCCTCACCGCGGTGTGGGGGTACGA
GGACTACGACCCGAACCTGGTCGAGGTGCACGTCAGCGCGTTGCGCCGGAAGCTGGAGGAGCACGGGCCCCGGCTGCTGC
ACACGGTCCGGGGACTGGGGTACGTGCTGCGCGCGGAGGACTCGTGA

Protein sequence : 
MGAVPTAARVLVIEDAEAIGAAVGSALREQGYQVRVRPDGRDLEGELTRFRPDLVVLDVMLPGRDGFALLEVIRRGSGAG
VVMLTARDGVQDRLRGLDRGADDYVTKPFVLAEVVARVSAVLRRLGRTPSTVQIGDLVVDADSAVVVRGNAQVELTATEL
RLLRYLAAQRGRVVGKTQILTAVWGYEDYDPNLVEVHVSALRRKLEEHGPRLLHTVRGLGYVLRAEDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-20 44
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-14 43
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator VFG1386 Protein 1e-25 44
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator VFG1390 Protein 7e-21 43
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-20 43
Amir_0844 YP_003098651.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-19 41