Gene Information

Name : Amir_6310 (Amir_6310)
Accession : YP_003103960.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 7401810 - 7402595 bp
Length : 786 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sat:SYN_00981 response regulator

DNA sequence :
GTGGATCGGCGGCGAGCGCTGGTTACGGACCGGGACCGGGTGACGACCAGCGGCGATGAGCGCTGGGCGGTGCGGGAGAA
GCGCGCGGGTAGTGGGACGATGTTCACCATGAAGGCACGCGTGCTCGTGGTGGACGACGACCCCGCCCTGGCGGAGATGC
TGACCATCGTGCTGCGGGGCGAGGGGTTCGACACGGCCGTGGTCGCCGACGGCGCCCGTGCGCTCCCCGCGCTGCGCGAG
CTCAAACCCGACCTCGTCCTGCTGGACCTGATGCTGCCGGGCATGAACGGCATCGACGTCTGCAAGGCGATCCGCTCGGA
GTCCGGCGTCCCGATCGTCATGCTGACGGCCAAGAGCGACACCGTCGACGTGGTGCTGGGCCTGGAGTCCGGCGCCGACG
ACTACGTCGTCAAGCCGTTCAAGCCCAAGGAGCTGGTGGCGCGCATCCGCGCCCGGATGCGCCGCACCGAGGCCGAACCG
GCCGAGGTGCTCCAGATCGGCGACCTGACCATCGACGTGCCCGGCCACGAGGTGCTGCGCGAGGGTCGCCCGATCCAGCT
CACCCCGCTGGAGTTCGACCTGCTGGTCGCGCTGGCCCGCAAGCCGCGCCAGGTGTTCACCCGCGAGGTGCTCCTGGAGC
AGGTGTGGGGCTACCGGCACGCCGCCGACACCCGCCTGGTCAACGTCCACGTGCAGCGGCTGCGCTCCAAGGTGGAGCGC
GACCCGGAGCACCCCGAGGTCGTCCTGACCGTGCGCGGCGTCGGGTACAAGGCGGGCCCTCCGTGA

Protein sequence :
MDRRRALVTDRDRVTTSGDERWAVREKRAGSGTMFTMKARVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRE
LKPDLVLLDLMLPGMNGIDVCKAIRSESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEAEP
AEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWGYRHAADTRLVNVHVQRLRSKVER
DPEHPEVVLTVRGVGYKAGPP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-36 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 5e-77 81
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator BAC0125 Protein 6e-34 46
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 9e-42 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 1e-41 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-37 44
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 8e-39 44
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 8e-41 43
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 7e-42 43
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-29 42
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 3e-35 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 4e-31 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 2e-30 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator BAC0533 Protein 1e-25 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator NC_002695.1.915041.p Protein 6e-26 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP000647.1.gene4257. Protein 1e-25 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP000034.1.gene3834. Protein 6e-26 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP001138.1.gene4273. Protein 4e-26 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 2e-21 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP004022.1.gene3215. Protein 2e-26 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 6e-33 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator BAC0596 Protein 4e-34 41
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator CP001138.1.gene2239. Protein 4e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator VFG1389 Protein 2e-29 45
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-32 43
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator VFG1702 Protein 2e-36 43
Amir_6310 YP_003103960.1 winged helix family two component transcriptional regulator VFG1563 Protein 3e-36 42