|
Name : ureC (Amir_0506) Accession : YP_003098319.1 Strain : Actinosynnema mirum DSM 43827 Genome accession: NC_013093 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : - Position : 546215 - 547912 bp Length : 1698 bp Strand : - Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : GTGACCCGCGTCGACCGCGAGCGGTACGCGGAGCTGCTCGGCCCCACCACCGGCGACCGGGTGCGGCTGGCCGACACCGA CCTGCTGATCACGGTGACCGACGACCTGTGCCGGGGCGCGGGCTCCGGCGACGAGGTGATCTTCGGCGGCGGCAAGGTGA TCCGCGAGTCCATGGGCCAGGGGATGGCGACCCGCGCGGAGGGCGCGCCGGACCTGGTGATCACCGGTGCGGTGGTGCTG GACCACTGGGGCGTGGTGAAGGCCGACGTGGGCGTGCGGGACGGCCGGATCACCGCGATCGGCAAGGCGGGCAACCCGGA CGTGATGGACGGGGTGCACCCGGACCTGGTGATCGGCCCGTCCACGGAGGTGCTGTCCGGCAACGGGAAGATCCTCACGG CGGGCGGGGTCGACTGCCACGTGCACTTCATCTGCCCGCAGATCGTGGACACCGCGCTGGCGTCCGGCCTGACCACGCTG ATCGGCGGCGGCACGGGACCGGCCGAGGGCACCAAGGCCACCACGGTCACGCCCGGCGCGTGGAACCTCGGCCGGATGCT GGCCGCGATGGACCACATGCCGGTGAACGTCCTGCTGCTGGGCAAGGGGAACACCGCCCGCGAGGACGCGCTGCGCGAGC AGCTGCTCGGCGGCGCGGGCGGGTTCAAGCTGCACGAGGACTGGGGCACCACGCCGGTCGCGATCGACACCGCGCTGCGG ATCGCCGACGAGTCCGGGGTGCAGGTGGCGATCCACACGGACACGTTGAACGAGGCCGGTTTCCTGGAGTCCACGCTGGA CGCCATCGCGGGCCGGTCGATCAACGCCTACCACTCGGAGGGCGCGGGCGGCGGGCACGCGCCGGACATCATCCAGGTGG TGTCCGAGCCGAACGTGCTGCCGTCGTCGACGAACCCGACCCGGCCGCACACCGTGAACACCCTCGAAGAGCACCTCGAC ATGCTCATGGTCTGCCACCACCTGAACCCGTCGGTGCCCGAGGACCTGGCGTTCGCGGAGAGCCGCATCCGGCCGACCAC GATCGCCGCCGAGGACGTGCTGCACGACCTGGGCGCGATCTCGATGATCAGCTCGGACTCGCAGGCGATGGGCCGGGTCG GCGAGGTGATCACGCGGACCTGGCAGACCGCGCACGTGATGCACGGCCGTCGCGGGGAGCTGGCGGAGAACCTGCGGGCG CGGCGGTACGTCGCCAAGTACACGATCAACCCGGCGATCGCGCACGGCATCGACCACGAGGTCGGGTCGGTGGAGGCGGG CAAGCTCGCGGACCTGGTGCTGTGGGAGCCGAAGTTCTTCGGGGTGCGGCCGTCGGTGGTGCTCAAGGGCGGGTTCATCG CGTGGGCGGCGATGGGGGACGCGAACGCCTCGATCCCGACGCCGCAGCCGGTGCTGGCGCGGCCGATGTTCGGCGCGCAC GCGGCGGCGCGCGGCAGCGTGCACTTCGTGTCGCAGCAGGCGGTGGACGCGGACCTGGCGGACCTGCTGCGGCTGTCCCG GCCGCTGGTTCCGGTGCGCGGCACGCGGGCGGTGGGCAAGGCGGACATGGTGCTGAACGACGCGCTGCCGCACGTGCGGG TGGACCCGGACAGCTTCGCGGTGACCGTCGACGGCGAGCTGGTCGAGCCGGAACCGGTGGAGCGGTTGCCGATGGCGCAG CGGTACTTCCTGTTCTGA Protein sequence : MTRVDRERYAELLGPTTGDRVRLADTDLLITVTDDLCRGAGSGDEVIFGGGKVIRESMGQGMATRAEGAPDLVITGAVVL DHWGVVKADVGVRDGRITAIGKAGNPDVMDGVHPDLVIGPSTEVLSGNGKILTAGGVDCHVHFICPQIVDTALASGLTTL IGGGTGPAEGTKATTVTPGAWNLGRMLAAMDHMPVNVLLLGKGNTAREDALREQLLGGAGGFKLHEDWGTTPVAIDTALR IADESGVQVAIHTDTLNEAGFLESTLDAIAGRSINAYHSEGAGGGHAPDIIQVVSEPNVLPSSTNPTRPHTVNTLEEHLD MLMVCHHLNPSVPEDLAFAESRIRPTTIAAEDVLHDLGAISMISSDSQAMGRVGEVITRTWQTAHVMHGRRGELAENLRA RRYVAKYTINPAIAHGIDHEVGSVEAGKLADLVLWEPKFFGVRPSVVLKGGFIAWAAMGDANASIPTPQPVLARPMFGAH AAARGSVHFVSQQAVDADLADLLRLSRPLVPVRGTRAVGKADMVLNDALPHVRVDPDSFAVTVDGELVEPEPVERLPMAQ RYFLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 2e-142 | 61 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 2e-142 | 61 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-136 | 58 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-136 | 58 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 2e-136 | 58 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-136 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_003098319.1 | urease subunit alpha | VFG0270 | Protein | 6e-125 | 56 |
