Gene Information

Name : Amir_5053 (Amir_5053)
Accession : YP_003102721.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 6014361 - 6015176 bp
Length : 816 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: spe:Spro_3426 ABC transporter-related protein

DNA sequence : 
ATGACCCGGTTGCGCGGCGAGGACCTGACCCTGGCCTACGACGAGCGCCTGGTGGCGGAGCACCTCGACGTCGCGATCCC
GGACGGCTCGTTCACCGTCATCGTCGGACCGAACGCCTGCGGCAAGTCGACCCTGCTCAAGGCGCTCGCGCGGATGCTCA
AGCCCACCTCGGGCACGGTCCTGCTCGACGGCGCGGCGATCTCCTCCTACCGCTCCAAGGAGGTCGCCCGCAGGCTCGGC
CTGCTCCCGCAGACCTCCACCGCCCCCGGCGGCATCGTGGTGGAGGAGCTGGTGGCGCGCGGCCGGTACCCGCACCAGCG
GCTGCTGCGCCAGTGGTCCGAGGACGACCAGCGGGTGGTCGCCGAGTCGATGCGCCTGACCGGCGTCGTGGAGCTGGCCG
ACCGGCCGGTGGACGAGCTGTCCGGCGGGCAGCGGCAGCGCGTGTGGCTGGCCATGGCGCTGGCCCAGCAGACCCCGGTC
CTGCTGCTCGACGAGCCCACCACGTTCCTGGACGTCGCCCACCAGGTCGAGGTGCTCGACCTGTGCGCCGACCTGCACGA
GGACGGCGCGCACACCCTGGTGGCCGTGCTGCACGACCTCAACCAGGCGTGCCGCTACGCCACCCACCTGATCGCGATGA
AGCCCGGCCGGGGCGTGGTGGCCCAGGGCGACCCGAGCGAGATCGTCACCGCCGCGCTGGTGGAGGACGTGTTCGGGCTG
CGCTGCCGGGTCATCCCGGACCCGGAGACGGGGACGCCGCTGATCGTGCCGCTCAAGCGCGAGCGCAAGGGGCTGGTGAG
CGGGGACGCCGCGTGA

Protein sequence : 
MTRLRGEDLTLAYDERLVAEHLDVAIPDGSFTVIVGPNACGKSTLLKALARMLKPTSGTVLLDGAAISSYRSKEVARRLG
LLPQTSTAPGGIVVEELVARGRYPHQRLLRQWSEDDQRVVAESMRLTGVVELADRPVDELSGGQRQRVWLAMALAQQTPV
LLLDEPTTFLDVAHQVEVLDLCADLHEDGAHTLVAVLHDLNQACRYATHLIAMKPGRGVVAQGDPSEIVTAALVEDVFGL
RCRVIPDPETGTPLIVPLKRERKGLVSGDAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-65 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-65 52
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-65 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-65 52
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-50 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-61 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-62 45
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-62 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-51 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-51 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-51 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-51 42
irp6C NP_938506.1 ATP-binding protein Irp6C Not tested Not named Protein 5e-24 41
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 2e-23 41
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_5053 YP_003102721.1 ABC transporter BAC0164 Protein 8e-51 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_5053 YP_003102721.1 ABC transporter VFG0925 Protein 4e-82 60
Amir_5053 YP_003102721.1 ABC transporter VFG1042 Protein 8e-51 48