Gene Information

Name : Amir_4904 (Amir_4904)
Accession : YP_003102576.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 5842070 - 5842849 bp
Length : 780 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsq:Rsph17025_3334 hypothetical protein

DNA sequence :
ATGAGCACGACGCTGCGCGCCGAGGAGCTGGTGGTGCGCTTCGGCGGCCACGCGGCCGTGGACGGGGTCGGGCTGACCGT
GCCGACCGGGTCGGTGACCGCGGTCGTGGGGCCCAACGGGTGCGGCAAGTCCACCTTGCTGCGCGCCCTCTCCCGCTTGC
TGCCAACGGATTCCGGCCGGGTGCTGCTGGACGGCGAGGACGTGCGCCGAACCCCGCCGCGCGCGTTCGCCCGCAAGGTC
GCCCTGCTGCCGCAGGAACCGCAGGCGCCGGACGGGCTGACCGTGGTGGACCTGGTGACGCGCGGCCGCGACCCGCACCG
CCGCTGGTACGACCAGTGGTCGAGGCCGGACGAGGAGATCGTGCTGGACGCGTTGCGCCGCACGGGTCTGGCGGAGCTGG
CGGACCGGCCGCTGCACACCCTGTCGGGCGGGCAGCGGCAGCGGGCGTGGATCGCGCTGGCGCTGGCGCAGCGCACCGAC
GTGCTGCTGCTGGACGAGCCGACGAACCACCTGGACGTGGCGCACCAGCTGGACGTGCTGGACACGGTGACCTCGTTGCG
GGGCTTGACGGTGGTGATGGTCCTGCACGACCTCGGCCTGGCCGCCCGGTACGCCGAGCGCGTGGTGGCGATGCGCGACG
GCCGGGTCGTGGCGTCCGGTCCGGTGGCGCGGGTGCTCACGCCGCCGCTGCTGCGGGAGGTGTTCGACGTGGAGTGCGGC
GTGCTGACCGACCCGGAGACGGGGCGGCCGGTGGTGGTGCCGAGGCGGGTGGTGCGCTGA

Protein sequence :
MSTTLRAEELVVRFGGHAAVDGVGLTVPTGSVTAVVGPNGCGKSTLLRALSRLLPTDSGRVLLDGEDVRRTPPRAFARKV
ALLPQEPQAPDGLTVVDLVTRGRDPHRRWYDQWSRPDEEIVLDALRRTGLAELADRPLHTLSGGQRQRAWIALALAQRTD
VLLLDEPTNHLDVAHQLDVLDTVTSLRGLTVVMVLHDLGLAARYAERVVAMRDGRVVASGPVARVLTPPLLREVFDVECG
VLTDPETGRPVVVPRRVVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-58 52
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-50 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-48 47
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-39 46
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 5e-37 45
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 5e-37 45
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 9e-37 45
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 6e-37 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-48 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-48 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-48 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-48 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4904 YP_003102576.1 ABC transporter BAC0164 Protein 1e-50 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4904 YP_003102576.1 ABC transporter VFG1042 Protein 1e-50 48
Amir_4904 YP_003102576.1 ABC transporter VFG0925 Protein 1e-56 45