Gene Information

Name : Amir_4439 (Amir_4439)
Accession : YP_003102131.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 5233180 - 5234094 bp
Length : 915 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: rsq:Rsph17025_0249 periplasmic solute binding protein

DNA sequence : 
ATGCCCCAACTTCCCCGAGTGGTGGGCGCGATCACCTCGATCGCGCTGCTGACCGCGGCCTGCGGCGCCGCGGGCGGCGC
GACCTCGGACGGCAGGCCCGTGGTGCTGACGACCTTCACCGTGCTCGCCGACATCGCGGCCAACGTCGCGGGCGGGCGCC
TCCGGGTCGAGTCGATCACCCGGCCCGGCGTCGAGGTCCACGGCTACGAGCCGACCCCGGCCGACGTCAAGAAGGCGGCG
CGGGCGGACCTGGTGGTGGACAACGGACTTGGCCTCGAAGCGTGGGCCGCCAAGTACACCGAGGACGCGGGCGCGCCGCG
CGTGGTCGCCAGCGCGGGCGTCACCCCCATCCCGATCAGCGAGGACGCGCGGGCAGGCGAGCCGAACCCGCACGCCTGGA
TGTCCCCGCTCACCACCCGCGCCTACGTCGACAACCTCGTGGCGGCGTTCAGCGACCTCGCCCCCGAGCACGCCGGGCAC
TTCCGCGCCAACGGCGAGCGCTACCGCGCCGAGCTGCTGCGGGCGCACGAGGACCTGGTGTCCGCGCTGCGCGCCGTGCC
CGATGACCGCCGCTCCCTGGTCACCTGCGAGGGCGCTTTCCCCTACCTGGCCCGCGACGCCGGCCTGACCGACCACTACC
TGTGGGCGGTCAACGCCGAGCGGCAGGCCACCCCGCGCCAGGTCGCCCGCGTCGTCGACCACGTGCGGGCCGCCGGGGTG
CCCGCCGTGTTCTGCGAGTCCACCGTCTCCGACGCCCCCATGCGCCAGGTCGCCGCCGCGACCGGGGCCGCGTTCGGCGG
CGTGCTCCACGTGGACTCGCTCTCCGAGCCCGACGGCCCCGTGCCCACCTACCTCGACCTGATCCGGCACGACGCGCGCA
CCATCGCCGCCGCCCTCACCGGGGGCGCGCGGTGA

Protein sequence : 
MPQLPRVVGAITSIALLTAACGAAGGATSDGRPVVLTTFTVLADIAANVAGGRLRVESITRPGVEVHGYEPTPADVKKAA
RADLVVDNGLGLEAWAAKYTEDAGAPRVVASAGVTPIPISEDARAGEPNPHAWMSPLTTRAYVDNLVAAFSDLAPEHAGH
FRANGERYRAELLRAHEDLVSALRAVPDDRRSLVTCEGAFPYLARDAGLTDHYLWAVNAERQATPRQVARVVDHVRAAGV
PAVFCESTVSDAPMRQVAAATGAAFGGVLHVDSLSEPDGPVPTYLDLIRHDARTIAAALTGGAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 6e-62 51
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 6e-62 51
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 6e-62 51
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-62 51
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-62 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4439 YP_003102131.1 periplasmic solute binding protein BAC0349 Protein 3e-62 51
Amir_4439 YP_003102131.1 periplasmic solute binding protein BAC0439 Protein 9e-54 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4439 YP_003102131.1 periplasmic solute binding protein VFG0525 Protein 2e-62 51