Gene Information

Name : Amir_4438 (Amir_4438)
Accession : YP_003102130.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 5232443 - 5233183 bp
Length : 741 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: plu:plu2673 iron transport system ATP-binding protein YfeB

DNA sequence : 
GTGAGCGCCCTGGAGGTGCGGGGCGTGACGGTCCGCTACGGCGACGTGCTCGCCCTCGACGGGGTCACCCTCGACCTGGC
CGAGGGCCGGGTGTGCGGGCTGGTCGGCGTGAACGGCTCCGGGAAGTCGACCCTGTTCAAGGCCATCACCGGGCTGGTGC
GCCCCGAGCGCGGCCGGGTGCTGGTCGCGGGCGGCGGGCCCCTCGCGGCCAGGCGGGCGGGCGCGGTCGCCTACGTGCCG
CAGAGCGAGGCCGTCGACTGGGGCTTCCCGGTGTCGGTGCGGGACGTGGTCATGACCGGGAGGCACGGCAGGCTGGGCTT
CACCCGGCGACCCGGCCGCGCCGACCACGACGCCGTCGACCGGGCCCTCGACCGGGTCGGCCTCACCGCGCTGGCGGGCA
GGCAGATCGGCAGCCTGTCCGGCGGGCAGCGCAAGCGCGCGTTCGTCGCGCGCGGCATCGCCCAGCGGGCGCGCGTGCTG
CTGCTGGACGAGCCGTTCGCGGGCGTGGACAAGCGCTCCGAGGCGCTGATGACCGCCCTGCTGCGCGAGCTGGCCGCCGA
CGGCGCGGCCGTGCTGGTGTCCACGCACGACCTGCGCGCCCTGCCCGAGCTGGCCGACGAGGCGGTGCTGCTCATGCGCC
GCGTCCTGGCCAGGGGGGCGCCGCACGACGTGCTGACCCCGGACACCCTCGCCCGCGCGTTCGGGCTCGACGCGACCGCG
CGGGACGGGGAACCGGTGTGA

Protein sequence : 
MSALEVRGVTVRYGDVLALDGVTLDLAEGRVCGLVGVNGSGKSTLFKAITGLVRPERGRVLVAGGGPLAARRAGAVAYVP
QSEAVDWGFPVSVRDVVMTGRHGRLGFTRRPGRADHDAVDRALDRVGLTALAGRQIGSLSGGQRKRAFVARGIAQRARVL
LLDEPFAGVDKRSEALMTALLRELAADGAAVLVSTHDLRALPELADEAVLLMRRVLARGAPHDVLTPDTLARAFGLDATA
RDGEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-42 50
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-42 50
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-43 50
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-42 49
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 7e-43 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4438 YP_003102130.1 ABC transporter BAC0350 Protein 4e-43 49
Amir_4438 YP_003102130.1 ABC transporter BAC0440 Protein 6e-50 49
Amir_4438 YP_003102130.1 ABC transporter BAC0400 Protein 3e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4438 YP_003102130.1 ABC transporter VFG0526 Protein 4e-43 49