Gene Information

Name : Amir_4437 (Amir_4437)
Accession : YP_003102129.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 5231562 - 5232446 bp
Length : 885 bp
Strand : -
Note : PFAM: ABC transporter; KEGG: rpb:RPB_3405 hypothetical protein

DNA sequence : 
GTGAACGTCTGCGAACTGCTCGTCGAACCGCTCACCTACGGCTTCATGGCGCGGGCGCTGCTCGCCTCCGTGGTGGCCGC
CGCGGTGTGCGCGGTGCTGTCCTGCTGGCTGGTGCTCATCGGCTGGTCCCTGATGGGCGACGCGGTGTCGCACGCCGTGC
TGCCCGGCGTCGTGCTGGCCCACGTCGCGGGCGCCCCGTTCGCGCTGGGCGCGGTGGTGTCCGGGTTCCTGGCGGTGGCG
CTGATCGGCGCGGTGCGCGACGCGGGCCGGGTCAAGGAGGACGCCGCGATCGGCGTCGTGTTCACCACCCTGTTCGCGCT
CGGGCTGGTGCTGGTGTCGGTGGTGCCCAGCCAGACCGACCTGGGGCACGTCGTGTTCGGGAACGTCCTGGGGGTCAGCC
GGGCGGACCTGGCGCAGATCGCGGCGCTGGGCGCGGTCGCGCTGACCGCGCTGCTGCTCAAGCGCCGCGACTTCACCCTC
TACGCCTTCGACCCGGTGCACGCCCACGCCATCGGCCTCAGCCCCCGCCTGCTCGGCGCGGCCCTGCTCGGGCTGCTCGC
GCTGACGTGCGTGGTGGCCCTGCAGGTGGTCGGCGTGGTCCTGGTGGTGGCGATGCTGATCCTCCCCGGCGCGACCGCCC
ACCTGCTGACCGACCGGTTCGGGCGGATGCTGGTGATCGCCCCGGCGCTCTCGGTCGGCTCGGCGGTGGCGGGGCTGTAC
CTGAGCTACCACCTGGACACCGCGTCCGGCGCGACCGTGGTCCTGGTGCAGGGGGTGGTGTTCCTGCTGGCCTACCTGCT
CGCTCCCCGGCACGGCGTGCTGGGGGCCCGGATCGCCTCGGGCGTCCGACGCGCCCGGTCGGTTGGTCAGGGGGTGGAGG
GCTAG

Protein sequence : 
MNVCELLVEPLTYGFMARALLASVVAAAVCAVLSCWLVLIGWSLMGDAVSHAVLPGVVLAHVAGAPFALGAVVSGFLAVA
LIGAVRDAGRVKEDAAIGVVFTTLFALGLVLVSVVPSQTDLGHVVFGNVLGVSRADLAQIAALGAVALTALLLKRRDFTL
YAFDPVHAHAIGLSPRLLGAALLGLLALTCVVALQVVGVVLVVAMLILPGATAHLLTDRFGRMLVIAPALSVGSAVAGLY
LSYHLDTASGATVVLVQGVVFLLAYLLAPRHGVLGARIASGVRRARSVGQGVEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-30 46
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-30 46
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-30 46
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-32 46
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-32 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-30 45
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-30 45
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-32 45
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-32 45
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-32 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4437 YP_003102129.1 ABC transporter BAC0442 Protein 4e-34 50
Amir_4437 YP_003102129.1 ABC transporter BAC0351 Protein 2e-30 46
Amir_4437 YP_003102129.1 ABC transporter BAC0352 Protein 8e-33 46
Amir_4437 YP_003102129.1 ABC transporter BAC0441 Protein 9e-34 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4437 YP_003102129.1 ABC transporter VFG0527 Protein 2e-30 46
Amir_4437 YP_003102129.1 ABC transporter VFG0528 Protein 8e-33 46