|
Name : Amir_0425 (Amir_0425) Accession : YP_003098238.1 Strain : Actinosynnema mirum DSM 43827 Genome accession: NC_013093 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein ThiC Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 459516 - 461159 bp Length : 1644 bp Strand : - Note : required for the synthesis of the hydromethylpyrimidine moiety of thiamine DNA sequence : GTGACGGCACTCGGGGACGGCTCGGTCAGGCCGAGCGTCACCACCGGGCCGATCCGGGGGTCCCGCAAGGTCCACCGCGA CGCGGAGGACGGCGTGCGGGTCCCGTTCCGCAGGGTCGAGCTCACCGACGGCGACCACTTCGACCTGTACGACACCTCCG GGCCTTACACGGCCGGGGACGTCGACGTGCGCGAGGGACTGGAGAAGATCCGCGCCGGCTGGATCTCGGCGCGCGAGCCC GTGAACGGGGCAGCCACCCAGCTGGCCTGGGCGCGGGCGGGCGTGATCACCCCGGAGATGCGGTTCGCGGCGCTGCGCGA GTCGCTGGCGCCGGAGTTCGTGCGCGACGAGGTCGCCGCGGGGCGCGCGGTGATCCCGGCCAACCGCAACCACCCGGAGT CCGAGCCGATGGTCATCGGCAAGGGGTTCCTGGTGAAGGTCAACGCCAACATCGGCAACTCGGCGGTGACCTCGTCCGTC GAGGAGGAGGTGGAGAAGATGGTGTGGGCGACCCGCTGGGGCGCCGACACCGTGATGGACCTGTCGACCGGCAAGCGCAT CCACGAGACCCGCGAGTGGATCATCCGCAACTCGCCGGTCCCCGTGGGGACGGTGCCGATCTACCAGGCGCTGGAGAAGG TCGGCGGGGATCCGGCCGCGCTGTCCTGGGAGGTGTACCGGGACACCGTCGTGGAGCAGGCCGAGCAGGGCGTGGACTAC ATGACGGTGCACGCGGGCGTGCTGCTGCGGTACGTGCCGCTGACGGCGCGGCGGGTCACCGGGATCGTCTCGCGCGGCGG CTCGATCATGGCCGCGTGGTGCCTGGCGCACCACGAGGAGAGCTTCCTGTACACCCGGTTCGCCGAGCTGTGCGAGATCC TGCGCCAGTACGACGTGACGTTCTCGCTGGGCGACGGGCTGCGGCCGGGGTCGATCGCGGACGCCAACGACGAGGCCCAG TTCGCCGAGCTGCGCACCCTGGGCGAGCTGGCGCGGGTGGCCAGGGCGCACGACGTGCAGGTGATGATCGAGGGGCCCGG CCACGTGCCGCTGCACAAGATCGCGGAGAACGTGCGGCTGGAGCAGGAGTGGTGCGACGGCGCGCCGTTCTACACGCTCG GCCCGCTGGCCACCGACGTCGCGCCCGCCTACGACCACATCACGTCGGCGATCGGCGCGGCGCAGATCGGGGCGCTCGGC ACGGCCATGCTCTGCTACGTGACCCCGAAGGAGCACCTGGGGCTGCCGGACCGGGACGACGTGAAGACCGGCGTGATCAC GTACAAGATCGCCGCGCACGCCGCCGACCTCGCCAAGGGCCACCCCGGCGCGCAGGCGTGGGACGACGCGCTGTCCAGGG CCAGGTTCGAGTTCCGCTGGGAGGACCAGTTCAACCTCTCGCTCGACCCGGACACCGCGCGCGAGTTCCACGACCGGACG CTCCCGGCGGAGCCCGCGAAGACGGCGCACTTCTGCTCGATGTGCGGGCCGAAGTTCTGCTCGATGCGGATCACGCAGGA CGTGCGGCGCTACGCTGAGGAGCGGGGTCTGTCCACTGTGGAAGCGATTGAGGCGGGTATGGCCGAGAAGGCGCACGAGT TCGACGACCGGGGCGGCAAGGTCTACCTGCCGGTCGTGGACTGA Protein sequence : MTALGDGSVRPSVTTGPIRGSRKVHRDAEDGVRVPFRRVELTDGDHFDLYDTSGPYTAGDVDVREGLEKIRAGWISAREP VNGAATQLAWARAGVITPEMRFAALRESLAPEFVRDEVAAGRAVIPANRNHPESEPMVIGKGFLVKVNANIGNSAVTSSV EEEVEKMVWATRWGADTVMDLSTGKRIHETREWIIRNSPVPVGTVPIYQALEKVGGDPAALSWEVYRDTVVEQAEQGVDY MTVHAGVLLRYVPLTARRVTGIVSRGGSIMAAWCLAHHEESFLYTRFAELCEILRQYDVTFSLGDGLRPGSIADANDEAQ FAELRTLGELARVARAHDVQVMIEGPGHVPLHKIAENVRLEQEWCDGAPFYTLGPLATDVAPAYDHITSAIGAAQIGALG TAMLCYVTPKEHLGLPDRDDVKTGVITYKIAAHAADLAKGHPGAQAWDDALSRARFEFRWEDQFNLSLDPDTAREFHDRT LPAEPAKTAHFCSMCGPKFCSMRITQDVRRYAEERGLSTVEAIEAGMAEKAHEFDDRGGKVYLPVVD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 6e-167 | 60 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 6e-167 | 60 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 4e-158 | 60 |
