Gene Information

Name : Amir_4293 (Amir_4293)
Accession : YP_003101993.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 5055248 - 5056090 bp
Length : 843 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pde:Pden_3525 ABC transporter

DNA sequence : 
GTGACCACCACCCACACCCTCGCGGTCGAGGACCTGACCATCGGCTACGGGGACCGGACGGTCATCAGCGGGCTCGACCT
GGAGATCCCGCCCGGCAGGATCACCGTGATCGTCGGGGCCAACGCGTGCGGCAAGTCCACGCTCCTGCGCTCGATGTCCC
GGCTGCTGGCCCCCAAGGGCGGCCGGGTGCTGCTCGACGGCAAGCTCGTGCACAAGACCCCCGCGAAGGAGCTGGCGCGG
GTCATGGGCCTGCTGCCGCAGGCCCCGATCGCCCCCGAGGGCATCACCGTGACCGACCTGGTCGGCCGGGGCAGGCACCC
GCACCAGGGCATCATGTCCCGCTGGAGCAAGGAGGACGACGTCGCGGTGGCCGCCGCCCTCGACGCCACCTCCACCGCCG
ACCTGGCCGAGCGCTCGGTCGACGAGCTGTCCGGCGGGCAGCGGCAGCGGGTGTGGATCGCGATGGTCCTGGCCCAGCAG
ACCGACCTGCTGCTGCTGGACGAGCCGACGACGTTCCTGGACGTGAGCCACCAGGTCGAGGTCCTGGACCTGCTGACCGA
CCTGAACCGCTCGCGCGGCACGACGATCGTGATGGTCCTGCACGACCTCAACCTCGCGGCCCGCTACGCGGACCACCTGA
TCGCCCTGGCGGACGGCGCGCTGCACTCGGCCGGCCCGGCGGCGGAGGTGCTGACGGAGGAGGGCGTGCGCGCGACGTTC
GGCCTGGACTGCCGCGTGATCACCGACCCGGTCTCCGGCAAGCCGCTCATGCTGCCGATCGGTCGGCACCACTCGGTGGT
GGGCGGTGCTGTGGCGGACGGTGCTGTGGTGGACGGCGAGTAG

Protein sequence : 
MTTTHTLAVEDLTIGYGDRTVISGLDLEIPPGRITVIVGANACGKSTLLRSMSRLLAPKGGRVLLDGKLVHKTPAKELAR
VMGLLPQAPIAPEGITVTDLVGRGRHPHQGIMSRWSKEDDVAVAAALDATSTADLAERSVDELSGGQRQRVWIAMVLAQQ
TDLLLLDEPTTFLDVSHQVEVLDLLTDLNRSRGTTIVMVLHDLNLAARYADHLIALADGALHSAGPAAEVLTEEGVRATF
GLDCRVITDPVSGKPLMLPIGRHHSVVGGAVADGAVVDGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-62 54
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-63 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-63 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-50 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-49 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-49 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-49 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-49 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-48 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4293 YP_003101993.1 ABC transporter BAC0164 Protein 1e-50 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_4293 YP_003101993.1 ABC transporter VFG0925 Protein 5e-66 55
Amir_4293 YP_003101993.1 ABC transporter VFG1042 Protein 1e-50 47