Gene Information

Name : Amir_3871 (Amir_3871)
Accession : YP_003101596.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4536951 - 4537634 bp
Length : 684 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A5589 DNA-binding response regulator YycF

DNA sequence : 
ATGGACGTCTCGGTGCTCATGGTGGAGGACGACGCGCACATCCGGCAGGCCCTCGGGCTCGCCCTGGAGGACGAGGGCTT
CGCCGTCTCGGAGGCCGTCTCCGGCGAGCAGGCGCTCGCGCTGCTCGACCGGCGCGCGTTCGACGTCGTGCTGCTCGACC
TCATGCTCCCCGGCGTGGACGGCCTGCACGTGTGCCGGGTGCTGCGCTCGCGCGGCGACCTGCCGGTCATCGTCGTCACC
GCCCGCGCCGACGCCGAGGACGTCATCGCCGGGCTGGAGGCGGGCGCCGACGACTACGTCACCAAACCGCTCGTCGCGGC
CGTCCTCGCGGCCCGCATCCGGGCCCTGCTGCGCCGTTCCGGTGGCGCCGCGCAGGCGGACGAGCTGCGCGCGGGCGACC
TGGTCGTCCGGCAGGACAACCGCACCGCGCACCGCGCCGGCGAGCAGGTCCACCTCACCCGCACCGAGTTCCGCCTGCTG
GTCGAGCTGCTCGCCGCCGAGGGCCGGGTCGTCACCCGTGAGCAGCTGCTGAACCGCGTGTGGGGCTACGACTACTTCGG
CGACACCCGCCTGCTGGACGTGCACATCCGCAGGCTCCGCCGCAAGGTCGAGCCCGACCCGGACACGCCCGCCCTGGTCC
TGACCGTGCGCGGCTCCGGCTACCGGATCGGCGCGGGGGACTGA

Protein sequence : 
MDVSVLMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHVCRVLRSRGDLPVIVVT
ARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGAAQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLL
VELLAAEGRVVTREQLLNRVWGYDYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGYRIGAGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-31 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_3871 YP_003101596.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 1e-39 44
Amir_3871 YP_003101596.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 5e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_3871 YP_003101596.1 winged helix family two component transcriptional regulator VFG1390 Protein 9e-31 43
Amir_3871 YP_003101596.1 winged helix family two component transcriptional regulator VFG1389 Protein 8e-23 43
Amir_3871 YP_003101596.1 winged helix family two component transcriptional regulator VFG1563 Protein 3e-31 41
Amir_3871 YP_003101596.1 winged helix family two component transcriptional regulator VFG1702 Protein 3e-31 41