Gene Information

Name : Amir_3612 (Amir_3612)
Accession : YP_003101347.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4227852 - 4228547 bp
Length : 696 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: shl:Shal_1616 lipoprotein releasing system, ATP-binding protein

DNA sequence : 
GTGACCACCGGCCCAGTGCTGCGCGCCGAGGGCGTGAGCAAGGAGTTCGGGCGCGGCGAGACCGCGACCAGGGTCCTGCA
CGACTGCGACCTGGAGGTCCGCGCCGGGCAGACCGTGGCCATCGTCGGCAAGAGCGGCAGCGGCAAGTCCACGTTCGCCA
ACTGCCTGTCCGGGCTGGACGAGCCGACCACCGGCACGATCACCCTGCTCGGCCACGACCTGGCCGCCCTGGACGAGCCC
GCGATGGCCAGGCTGCGCGCCGAGCACATCGGCTTCGTGCTGCAGAAGGACAACCTGGTGCCGACGCTCACCCTGGAGGA
GAACGTCGCCGCCCCGCTGATCATGTCCGGAACCCGGCTGTCCGCCGCGCTCGCCAAGGCCCGCTCCGCGCTGGACGAGG
TCGGCCTGGCGCACCGCGCGGGCAGCTGGCCCGGCCAGGTCTCCGGCGGCGAGGCCCAGCGCGCCGCCGTGGCCAGGGCG
TGCGTCAACGACCCGGCCATCGTGTTCGCCGACGAGCCGACCGGCGCGCTCGACGAGGAGAACGGCCTGCGCGTGCAGGA
GCTGTTCCGGGCCGTGGTGCGCGAGCGCGGCGCCGCCAGCGTCATCATCACCCACGACCTGGACCTCGCCGCGTGGGCCG
ACGTCGTCGCCACCATGACCGCGGGCACCGTCGTGTCGCGGGCGCGGGTCTCCTGA

Protein sequence : 
MTTGPVLRAEGVSKEFGRGETATRVLHDCDLEVRAGQTVAIVGKSGSGKSTFANCLSGLDEPTTGTITLLGHDLAALDEP
AMARLRAEHIGFVLQKDNLVPTLTLEENVAAPLIMSGTRLSAALAKARSALDEVGLAHRAGSWPGQVSGGEAQRAAVARA
CVNDPAIVFADEPTGALDEENGLRVQELFRAVVRERGAASVIITHDLDLAAWADVVATMTAGTVVSRARVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-27 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_3612 YP_003101347.1 ABC transporter NC_012469.1.7686878. Protein 7e-30 42
Amir_3612 YP_003101347.1 ABC transporter NC_008702.1.4606598. Protein 8e-27 42