Gene Information

Name : Amir_0333 (Amir_0333)
Accession : YP_003098148.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 362408 - 363256 bp
Length : 849 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cvi:CV_2234 enterobactin-iron transport system ATP-binding protein

DNA sequence : 
ATGACCACGGCACCCCCGTCCCCCAGCGCGCGCCTGCGCGCCCACGAGCTGTCGATCGGCTACGGCGACCGGGTGATCGT
CGACCGGCTCGACCTGGACGTGCTCGACGGCGCCGTCACCGCCGTCATCGGCCCCAACGGCTGCGGCAAGTCCACGATGC
TGCGCGCGCTCGCCCGCCTGCTGCCCACCAGGGGCGGGCAGGTCCTGCTCGACGGCAGGCCGATCACCGAGGTGCCCACC
CGCGAGGTGGCCAAGGTGCTCGGGATGCTGCCGCAGACCCCGCAGGGCCCCGAGGGGTTGACCGTGGCCGACCTGGTCGC
CAGGGGCAGGCACCCGCACCAGGCCTGGTACCGGCAGTGGTCCGGCGACGACGAGGCCGCCGTCGCCGAGGCGCTGCGGC
TGACCGGCATGGAGGACTTCGCCGAGCGCACCCTCGACCAGCTCTCCGGCGGCCAGCGCCAGCGCGCCTGGATCTCCATG
GCGCTCGCCCAGGGCACCGACCTGCTGCTGCTCGACGAGCCCACGACCTACCTGGACCTCGCGCACCAGATCGACGTGCT
GGACCTGGTGCGGCTGCTGCACGCCGAGGGCGGGCGCACGATCGTCATGGTGCTGCACGACCTGAACCTCGCCGCCCGCT
ACGCCGACCACCTGGTGGCCATGAAGGACGGTCGGATCGTGGTGCAGGGCGCGCCGTCCGAGGTGCTGACCGAGCAGGTG
CTCAAGGAGGTCTTCGGGCTGGAGGCCGCCGTCATCGAGGACCCGGTCGCGGGCACCCCGATGGTGGTGCCGATCCGGTC
CACGACGCACGCGGCGGCCAACCGCAGGAAAGACCACCCGAAGGGCTGA

Protein sequence : 
MTTAPPSPSARLRAHELSIGYGDRVIVDRLDLDVLDGAVTAVIGPNGCGKSTMLRALARLLPTRGGQVLLDGRPITEVPT
REVAKVLGMLPQTPQGPEGLTVADLVARGRHPHQAWYRQWSGDDEAAVAEALRLTGMEDFAERTLDQLSGGQRQRAWISM
ALAQGTDLLLLDEPTTYLDLAHQIDVLDLVRLLHAEGGRTIVMVLHDLNLAARYADHLVAMKDGRIVVQGAPSEVLTEQV
LKEVFGLEAAVIEDPVAGTPMVVPIRSTTHAAANRRKDHPKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-72 58
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 9e-53 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-48 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-57 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-57 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-51 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-51 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-51 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-51 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-55 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-55 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-55 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-55 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_0333 YP_003098148.1 ABC transporter BAC0164 Protein 6e-53 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_0333 YP_003098148.1 ABC transporter VFG0925 Protein 3e-64 51
Amir_0333 YP_003098148.1 ABC transporter VFG1042 Protein 5e-53 46