Gene Information

Name : Amir_0331 (Amir_0331)
Accession : YP_003098146.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 360226 - 361230 bp
Length : 1005 bp
Strand : +
Note : PFAM: transport system permease protein; KEGG: pde:Pden_3523 transport system permease protein

DNA sequence : 
GTGGTGACCGTCCGCACGACCCGCCGCTACGGCGTGCTCGCGCTGCTGCTGGGCGCGCTCGCCCTGGCCGCCGCCGCGAG
CGTCGCGTTCGGCTCCAAGTCGATCGACCTCGGCTCGGTGGCGCACGCCCTGCTCAGCCCGACCGGCACCGAGGACGACT
CGATCGTCCGCGAGCTGCGCCTGCCCAGGACGGGCTTCGCGATCGCCGTCGGCATGGCGCTGGGCATCGGCGGCGCGCTG
ATCCAGGGCCACACCCGCAACCCGCTCGCAGACCCCGGCATCCTCGGCATCAACCAGGGCGCGGGCTTCGCCGTGGTCCT
CGCGATCTCCCTGCTGGGCGTGACCAGCCCGCTCGGCTACGTCTGGTTCGCCTTCGCGGGCGCGCTCGCCGCCAGCGTCG
TGGTCTTCCTGCTCGGCTCCGGCCGGAACGGGCCCACCCCGGTCACCCTCGCCCTCGCGGGCGCCGCGGTCAGCGCGCTG
CTCCAGGGCCTGATCTCCGGCGTGGTGCTGTCCGACCGGCAGAGCCTGGACTCGTTCCGGTTCTGGCAGGTCGGCTCGGT
CGAGGGGCGCGACGTCGAGGTCCTGTGGCAGGTGCTGCCGTTCCTGGTCGTCGGGCTGGTGCTCGCGGCGTTCAACGCGC
CAGGGCTCAACGCCCTCTCGCTCGGCGACGAGGTGGCCCGCTCGCTGGGCCAGAACGTGAACCGCACCAGGGCGCTGGGC
ATCGGCGCGATCACCCTGCTGGTCGGCGGCTCGGTCGCGGCCTGCGGGCCGATCGGCTTCCTCGGCCTGGTGGTCCCGCA
CGCCGCCCGCGCGGTGACCGGGCCGGACCACCGGTGGCTGCTGCCGGTGGCCGGGCTGATGGGCGGCGTGCTGCTGCTCG
TGGCGGACGTCCTCGGCCGGGTGGTCGCCCGGCCCGGCGAGTTGGAGGTCGGCATCGTGATGGCCCTGGTGGGCGCCCCG
TTCTTCGTCGCGCTGGTCCGCCGCCGGAACCTGGTGAAGCTGTGA

Protein sequence : 
MVTVRTTRRYGVLALLLGALALAAAASVAFGSKSIDLGSVAHALLSPTGTEDDSIVRELRLPRTGFAIAVGMALGIGGAL
IQGHTRNPLADPGILGINQGAGFAVVLAISLLGVTSPLGYVWFAFAGALAASVVVFLLGSGRNGPTPVTLALAGAAVSAL
LQGLISGVVLSDRQSLDSFRFWQVGSVEGRDVEVLWQVLPFLVVGLVLAAFNAPGLNALSLGDEVARSLGQNVNRTRALG
IGAITLLVGGSVAACGPIGFLGLVVPHAARAVTGPDHRWLLPVAGLMGGVLLLVADVLGRVVARPGELEVGIVMALVGAP
FFVALVRRRNLVKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 7e-26 43
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 7e-26 43
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 7e-26 43
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 7e-26 43
fecD AAL08452.1 FecD Virulence SRL Protein 5e-22 42
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 5e-36 41
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 4e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_0331 YP_003098146.1 transport system permease BAC0163 Protein 3e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_0331 YP_003098146.1 transport system permease VFG0926 Protein 5e-31 48
Amir_0331 YP_003098146.1 transport system permease VFG1043 Protein 3e-22 42