Gene Information

Name : Amir_2720 (Amir_2720)
Accession : YP_003100501.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3131153 - 3131938 bp
Length : 786 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_3149 ABC transporter

DNA sequence : 
GTGACCGCGCGCTTGACCGCCAGGGACGTGACCCTGCGCTACGGGGAGCGGGTCGTGTCGACCCGGCTCGCCCTCGACGT
GCCGGACGGGGCGTTCACCGCCGTCGTCGGGCCCAACGCCTGCGGGAAGTCGACGCTGCTGCGCGCGTTCGCGCGGCTGC
TCAAGACCTCCGGCGGGGAGGTGGCGTTCGACGGGAGGCCGGTGGGCGACTACCCGACGAAGGCGCTGGCCCGCTCGCTC
GGGTTCCTGCCGCAGGAACCCGTCGCGCCGGAGGACATCCGGGTGCGGCAGCTGGTGGCGCGCGGCCGGTTCCCGCACCA
GTCGCTGCTGTCGACCTGGTCGGAGCAGGACGAGGCCGCCGTCGCGCGGGCCGTCGCGGCGGCCGGGGTGGCGGAGCTGG
TGGACCGGCCGGTGCGGGAGCTGTCCGGCGGGCAGCGGCAGCGGGTGTGGGTGGCCGTGGTGCTGGCCCAGGACACGCCC
TACCTGCTGCTGGACGAGCCGACGTCCTTCTTGGACCTGACGCACCAGTACCAGTTGCTGGAGCTGCTGGCGGGGTTGCG
CGACGAGGGGCGGACCGTGATCGCGGTGCTCCACGACGTCAACCAGGCCTGCCGGTACGCCGACCACCTCGTGGCGATGC
GCGACGGGCGCGTGGTCGCGGAGGGCGCGCCGTCCGAGATCGTGGACGCCGCGCTGGTGCGGGAGGTGTTCGACCTGCCG
AGCGTGGTGGTGCCGGACCCGGTGACCGGCACGCCGATGGTCGTGCCGGACCTCAGAGCCTGCTGA

Protein sequence : 
MTARLTARDVTLRYGERVVSTRLALDVPDGAFTAVVGPNACGKSTLLRAFARLLKTSGGEVAFDGRPVGDYPTKALARSL
GFLPQEPVAPEDIRVRQLVARGRFPHQSLLSTWSEQDEAAVARAVAAAGVAELVDRPVRELSGGQRQRVWVAVVLAQDTP
YLLLDEPTSFLDLTHQYQLLELLAGLRDEGRTVIAVLHDVNQACRYADHLVAMRDGRVVAEGAPSEIVDAALVREVFDLP
SVVVPDPVTGTPMVVPDLRAC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-61 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-60 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-60 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-60 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-60 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-51 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-53 43
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-54 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-54 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_2720 YP_003100501.1 ABC transporter BAC0164 Protein 2e-51 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_2720 YP_003100501.1 ABC transporter VFG0925 Protein 1e-67 53
Amir_2720 YP_003100501.1 ABC transporter VFG1042 Protein 2e-51 47