Gene Information

Name : Amir_2708 (Amir_2708)
Accession : YP_003100489.1
Strain : Actinosynnema mirum DSM 43827
Genome accession: NC_013093
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3107584 - 3108357 bp
Length : 774 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mpo:Mpop_4222 ABC transporter

DNA sequence :
GTGAGCGCGGGACTGGCCGCCCGCTCGGTGCGCAGGGTCACCGGGGGCAAGGTCATCGTCGACGGGGTGACCCTGGATCT
GGAGCCGGGCAGCACGACCGGGCTGCTCGGGCCGAACGGCGCCGGGAAGTCGACGCTGCTGCGGCTGCTGTGCGGGGTGC
TCGCGCCCACGGCGGGCGTCGTGACGCTGGACGGCGAACCGCTGGGCCGCTCCCGGCGCGAGCTGGCGCGGCGGCTCGCG
GTCGTGGCGCAGCAGGCGGAGACGCAGGTCGAGCTGACCGTGTCCGAGGTCGTGCGGCTCGGGCGCGTGCCGCACCGCAA
GCTGCTGGCCGGGCCGACGGCGCGGGACGAGGCGGCGGTCGCCCAGGCCCTGGAGCGGACCGGGCTGACCGGGCACGCCG
GGCAGTCGTGGCACACGCTGTCGGGCGGGGAGCGGCAGCGGGTGCAGATCGCGCGGGCGCTGGCGCAGGAGCCGGAGGAG
CTGCTGCTCGACGAGCCGACCAACCACCTGGACATCCAGCACCAGCTGGAGCTGCTCGGGCTGGTGGTGTCGCTGCCGGT
GACGGCGGTGATCGCGCTGCACGACCTGAACCTGGCGGCCATGCACTGCGACCGGCTGGTGGTGCTGCGCGCCGGGAAGG
TGGTGGCGACCGGGCGGCCGGAGGAGGTGCTGACGGCGGAGCTGATCGGCGAGGTCTACGGGGTCCGCGCCGAGGTGACC
CCGACCGGCGTCGACGGGCGACCGCACGTGCGGTACCTGGGGGTCGGGCGCTAG

Protein sequence :
MSAGLAARSVRRVTGGKVIVDGVTLDLEPGSTTGLLGPNGAGKSTLLRLLCGVLAPTAGVVTLDGEPLGRSRRELARRLA
VVAQQAETQVELTVSEVVRLGRVPHRKLLAGPTARDEAAVAQALERTGLTGHAGQSWHTLSGGERQRVQIARALAQEPEE
LLLDEPTNHLDIQHQLELLGLVVSLPVTAVIALHDLNLAAMHCDRLVVLRAGKVVATGRPEEVLTAELIGEVYGVRAEVT
PTGVDGRPHVRYLGVGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 4e-39 47
irp6C NP_938506.1 ATP-binding protein Irp6C Not tested Not named Protein 8e-26 44
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 3e-25 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-29 42
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-29 42
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-29 42
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 3e-29 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-26 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-28 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-28 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-28 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-28 42
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 6e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_2708 YP_003100489.1 ABC transporter BAC0164 Protein 1e-29 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amir_2708 YP_003100489.1 ABC transporter VFG0925 Protein 2e-32 44
Amir_2708 YP_003100489.1 ABC transporter VFG1042 Protein 1e-29 42