Gene Information

Name : FIC_01320 (FIC_01320)
Accession : YP_003095830.1
Strain : Flavobacteriaceae bacterium 3519-10
Genome accession: NC_013062
Putative virulence/resistance : Virulence
Product : Sigma-54 dependent transcriptional regulator/response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1431658 - 1432842 bp
Length : 1185 bp
Strand : -
Note : -

DNA sequence : 
ATGCAAAAAATCTTAATAGTTGAAGATGAAAAAGCTATTTCGGGTGTTCTACAAAGTATACTTTCCGACGAGCTTCCCGA
GTATGAATTTTTTATCGCTGAAGATGGCCTCGATGGTCTGAAACAGATTGAAAAAGAAGATTTTGCGCTGGTAGTCTCCG
ATATAAAGATGCCAAAGCTGTCGGGCACAGAACTGCTGAAACAGGCGCTCCAGATAAAACCCGAAACCACTTTTGTAATG
ATTTCCGGCCATGCCGATATTGATACGGCTGTTGCCTGCCTTAAAGAAGGTGCGTATGATTTCATCTCGAAACCGGTTGA
TATAAACAGGCTCATCACGAGTGTGAAGAATGCGCTGGACAAAAGAATACTTCAAAAGACCAATCAGGTACTTAACGTTG
AGAATTCAACCCTGAAAAAGAAGGTTAATAAGAAATTTCAGATGATCGGCCAGTCGCCTGCGCTTAAAAAGATACAGGAC
ATGATCGAGAAGGTTGCCGCTTCAGACGCCAGAGTGCTGATCACTGGCCCCAACGGTGCCGGAAAAGAGCTTGTAGCGCA
CGCCATTCATGCACAAAGCGACCGCAGCAGAGGACCGATGATTGAAGTAAACTGCGCCGCAATTCCGTCCGAACTTATTG
AATCTGAATTATTTGGACACGTAAAAGGTAGTTTCACCGGTGCCATTAAAGATAAACAGGGCAAATTCGAACTTGCCACA
AACGGTACTATTTTCCTCGATGAGATCGGTGATATGTCACTTGTGGCGCAGGCAAAAGTGCTTCGGGCTCTTCAGGAAAG
CAAAGTTTCGCCGGTAGGAAGCGACAAAGAAATAAAGGTGGATGTGCGCATTCTGGCGGCCACCAATAAAAACATGCAGA
AAGAGATTGAGGCTGGTAAATTCCGTGAAGACCTTTATCATCGTCTTTCGGTTATCGAAATTTACGTGCCGCCTTTGGAT
GAAAGAAAAGAAGATATCCGGCTTTTGGTGGAGCATTTTTCGAAGATTATTTCGGAAGAACACGGCACTGCACAGAAGTC
ATTCGACGAGAACGCGATAAAAGCGCTCGAAAACTTCGCCTGGACCGGAAACATACGCGAGCTGCGCAACGTGGTTGAAC
GCCTTATTATATTAGGTTCCAACCCTGTTTCCGAAACCGATGTGGCGAATTTTGTAAGAAAATAA

Protein sequence : 
MQKILIVEDEKAISGVLQSILSDELPEYEFFIAEDGLDGLKQIEKEDFALVVSDIKMPKLSGTELLKQALQIKPETTFVM
ISGHADIDTAVACLKEGAYDFISKPVDINRLITSVKNALDKRILQKTNQVLNVENSTLKKKVNKKFQMIGQSPALKKIQD
MIEKVAASDARVLITGPNGAGKELVAHAIHAQSDRSRGPMIEVNCAAIPSELIESELFGHVKGSFTGAIKDKQGKFELAT
NGTIFLDEIGDMSLVAQAKVLRALQESKVSPVGSDKEIKVDVRILAATNKNMQKEIEAGKFREDLYHRLSVIEIYVPPLD
ERKEDIRLLVEHFSKIISEEHGTAQKSFDENAIKALENFAWTGNIRELRNVVERLIILGSNPVSETDVANFVRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-61 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-61 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FIC_01320 YP_003095830.1 Sigma-54 dependent transcriptional regulator/response regulator BAC0467 Protein 2e-74 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FIC_01320 YP_003095830.1 Sigma-54 dependent transcriptional regulator/response regulator VFG1214 Protein 1e-68 44