Gene Information

Name : Phep_3673 (Phep_3673)
Accession : YP_003093926.1
Strain : Pedobacter heparinus DSM 2366
Genome accession: NC_013061
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4384788 - 4385471 bp
Length : 684 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGAAGGGTTCGAAGGTTTTGCTAATTGAAGATACTCCAGATCTTGTGTCGGTCATTTTAAGGGGGCTTAGCGAAGAAGG
AATAGAGATCAGCGTTGCTGCTGATGGAGTAACTGGTCTGGAAATGGCTTTTAAATATGATTTTGACCTGATCGTGCTCG
ACATCATGTTGCCCGTCATGAACGGGATCCAGGTGTGCAAAGAGATCCGAAAGCGGAATACCGATGTCGCTATCCTTATG
CTTACTGCACTTGGTAGCACGGAAAACATTGTAACCGGACTGGAAAGCGGTGCCGATGATTACCTGGTAAAGCCATTCAA
ACTGGAAGAACTGGTTGCCCGTATGCGTACACTGATCAGGCGAAGCAGTAAACAGGCTGCAGTTACAGATCGCATCAGTA
TAGCCGATCTTGAAATAAATATAGCTTCCAAAACCGTTACTAAAACCGGAAAACCCGTTAACCTTACTGCAACAGAATAC
CGCCTGCTCGAATACCTGCTCAAAAATCACAATAAAGTTCTGTCACGGATCCAGATCCTTGAAAATGTATGGGATATCGA
TTTCAATTTAGGAACTAATGTGGTAGATGTTTACATCAATTATCTCCGTAAAAAAATCGACAATGTAAACGGGGGCAGGC
TAATCCATACTGTTTTTGGAATGGGGTATATTTTAAAAGAATAA

Protein sequence : 
MKGSKVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQVCKEIRKRNTDVAILM
LTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSKQAAVTDRISIADLEINIASKTVTKTGKPVNLTATEY
RLLEYLLKNHNKVLSRIQILENVWDIDFNLGTNVVDVYINYLRKKIDNVNGGRLIHTVFGMGYILKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-36 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Phep_3673 YP_003093926.1 response regulator receiver BAC0125 Protein 2e-42 44
Phep_3673 YP_003093926.1 response regulator receiver BAC0308 Protein 8e-40 44
Phep_3673 YP_003093926.1 response regulator receiver BAC0111 Protein 1e-43 44
Phep_3673 YP_003093926.1 response regulator receiver BAC0197 Protein 2e-37 44
Phep_3673 YP_003093926.1 response regulator receiver BAC0083 Protein 7e-40 42
Phep_3673 YP_003093926.1 response regulator receiver NC_002951.3238224.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_007793.3914065.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_002758.1121390.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_010079.5776364.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_002952.2859858.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_007622.3794948.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_003923.1003417.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver NC_013450.8614146.p0 Protein 3e-39 41
Phep_3673 YP_003093926.1 response regulator receiver BAC0347 Protein 2e-38 41
Phep_3673 YP_003093926.1 response regulator receiver NC_002952.2859905.p0 Protein 4e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_009641.5332272.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_013450.8614421.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_007793.3914279.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_002745.1124361.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_009782.5559369.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_002951.3237708.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_003923.1003749.p0 Protein 4e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_002758.1121668.p0 Protein 5e-34 41
Phep_3673 YP_003093926.1 response regulator receiver NC_007622.3794472.p0 Protein 4e-34 41
Phep_3673 YP_003093926.1 response regulator receiver BAC0638 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Phep_3673 YP_003093926.1 response regulator receiver VFG1389 Protein 6e-42 45
Phep_3673 YP_003093926.1 response regulator receiver VFG1390 Protein 9e-47 42
Phep_3673 YP_003093926.1 response regulator receiver VFG0596 Protein 3e-36 41