Gene Information

Name : Phep_2213 (Phep_2213)
Accession : YP_003092479.1
Strain : Pedobacter heparinus DSM 2366
Genome accession: NC_013061
Putative virulence/resistance : Virulence
Product : N-acetylneuraminate lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0329
EC number : 4.1.3.3
Position : 2550290 - 2551216 bp
Length : 927 bp
Strand : -
Note : PFAM: Dihydrodipicolinate synthetase family

DNA sequence : 
ATGAATAAAATTACAGGATTAATAGCAGCAACTTTTGCTGCTTATCGTGAAGATGGAACTATAAATCTAGACATTATACC
TTCCCTGGTCGACAAAATGATAAATGATGGCTTATCAGGCGTATTTATATGCGGCACCAATGGGGAAGGCCCCAACCTCA
CCATTGAAGAGCGGATGGCCATTGCCGAGGCTTATGTTAAAGCCGCCAATAAGCGTATCCTCGTGCTGGTACATGTAGGT
CACAGCTCTATAGCCGAATGTCGCAAATTGGCTGCCCATGCCGAAAAAATAGGTGCCGATGCCATTTCTTCTGTTGCGGC
TTTCTATTTTAAGCCAACTTCCGTAAGTAACCTGGTCAACAGCATGGCCCAAATTGCGTCTGCAGCACCCAATACACCTT
TTTATTATTACAGTATCCCTACGCTTACAGGAGTGGGTATGGACATGATCTCTTTCCTTGAACTGGCCGAAAACGCAATC
CCTAACCTTGCAGGAATTAAATATACAGCCTCAACTTTACATGAATACCAGGCCTGTCTGAACTATAGGAACGGTAAATT
CGATATCCTGTTTGGCTACGATGAAATGCTGCTCCCTGCACTGGCTGTTGGTGCAAAAGGAGCCATAGGCAGTACCTATA
CCTTTGCAGCACCCCTGTATATAAAAGTAATGAAAATGTACGAAGATGGCCTGAACGAAGAAGCCGCAGCAGTCCATATG
AATGCAGTAAACATGGTACGCGAACTGGTAAAATTCCCGCCAATCCCTGCACAGCGGGCATTGATGAAAATGGAAGGCTT
TGATTTAGGTAAATGCCGCCTGCCCCTTGAACCACTGTCAGATAAAGATGCTGACAGTTTCAGATCGGCACTTGAAGGTA
TCGGCTTTTTTAAAGTGGTAAAAGAGGCCCTGCAATGCCATGAATAA

Protein sequence : 
MNKITGLIAATFAAYREDGTINLDIIPSLVDKMINDGLSGVFICGTNGEGPNLTIEERMAIAEAYVKAANKRILVLVHVG
HSSIAECRKLAAHAEKIGADAISSVAAFYFKPTSVSNLVNSMAQIASAAPNTPFYYYSIPTLTGVGMDMISFLELAENAI
PNLAGIKYTASTLHEYQACLNYRNGKFDILFGYDEMLLPALAVGAKGAIGSTYTFAAPLYIKVMKMYEDGLNEEAAAVHM
NAVNMVRELVKFPPIPAQRALMKMEGFDLGKCRLPLEPLSDKDADSFRSALEGIGFFKVVKEALQCHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0024c ACA01841.1 dihydrodipicolinate synthase/N-acetylneuraminate lyase Not tested VPI-2 Protein 9e-53 42
VC1776 NP_231411.1 N-acetylneuraminate lyase Not tested VPI-2 Protein 4e-52 41
VC0395_A1374 YP_001217317.1 dihydrodipicolinate synthetase family protein Not tested VPI-2 Protein 4e-52 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Phep_2213 YP_003092479.1 N-acetylneuraminate lyase VFG1109 Protein 2e-52 41