Gene Information

Name : Phep_1345 (Phep_1345)
Accession : YP_003091622.1
Strain : Pedobacter heparinus DSM 2366
Genome accession: NC_013061
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1603525 - 1604208 bp
Length : 684 bp
Strand : -
Note : PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain

DNA sequence : 
ATGTTTAAGATTGCATTAGCAGAAGATGACCCTAAAATAGCCGATCTGATTAAAAGCGGGCTGGAAGAACAAGGCTATGA
AATAACCAGTATTGCCGATGGACAGCAGGCATTGGAAAGTTTTGGCATAAACCATTTTGACCTTGTTATTCTGGATATTA
TGATGCCGGGACTTAATGGAATAGAACTTTGCAGGCAACTCCGCAGCAGCCATAAAAACCTGCCCATCCTGATGCTTACC
GCACTGAGTACGGTAGACGATAAGGTAATGGGTTTAAAGGCGGGTGCCGATGATTACCTGGCCAAGCCTTTCCATTTTAA
AGAGCTGCTTGCCAGAATTGAAGCGCTTTTACGCAGGTACAGCACCGGTACTATCCAAAAGCAACACCAACATGAACTTA
CTTTTGAAAACATTACTTTAAATACCTACAGCAAAGAGGTAAAAAGGGCCGGCATCAATATTGAGCTTACGGCAAAAGAG
TTTACACTTCTTGAATTATTTTTACGAAACCCCAACAGGCTCTTGTCCAGACAGTATATTGCTGAAAACGCATGGGACAT
TAACTTTGATACCGGCACCAATGTGATTGACGTATATGTAAATTTTCTGCGCAATAAAATTGAAAAGGGATTTGACAGAA
AAGTGATCCACACCAAAATAAATATGGGTTATATCCTTAAATAG

Protein sequence : 
MFKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGIELCRQLRSSHKNLPILMLT
ALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRRYSTGTIQKQHQHELTFENITLNTYSKEVKRAGINIELTAKE
FTLLELFLRNPNRLLSRQYIAENAWDINFDTGTNVIDVYVNFLRNKIEKGFDRKVIHTKINMGYILK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Phep_1345 YP_003091622.1 response regulator receiver BAC0083 Protein 3e-38 45
Phep_1345 YP_003091622.1 response regulator receiver BAC0111 Protein 2e-39 45
Phep_1345 YP_003091622.1 response regulator receiver BAC0347 Protein 1e-31 43
Phep_1345 YP_003091622.1 response regulator receiver BAC0638 Protein 7e-34 43
Phep_1345 YP_003091622.1 response regulator receiver HE999704.1.gene1202. Protein 5e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Phep_1345 YP_003091622.1 response regulator receiver VFG0596 Protein 2e-34 42
Phep_1345 YP_003091622.1 response regulator receiver VFG1390 Protein 2e-40 42