Gene Information

Name : Phep_1132 (Phep_1132)
Accession : YP_003091412.1
Strain : Pedobacter heparinus DSM 2366
Genome accession: NC_013061
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1326138 - 1328678 bp
Length : 2541 bp
Strand : +
Note : PFAM: ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain

DNA sequence :
ATGGAAGCTAAATTTTCTCCACAAGTAAAAGACGTGATATCTTTTAGCAGGGAAGAAGCCCTGAGATTAGGTCACGATTA
CATAGGCGCAGAACATCTTTTGTTAGGCCTTATTCGCGAAGGCGATGGTATGGCCATTAAGATATTAAAATCACTAGGTG
TTGATACTTCAAAACTTCGTCGCTCGATTGAGGATTCGGTTAGGGGTACGTCGAGTGTAACGGTTAACCTGGGAAACATC
CCCTTAACCAAACAAGCAGAAAAAGTTTTAAAGATCACTTATCTGGAAGCAAAGATCTTCAAAAGCGATTTGATAGGTAC
AGAACACCTGTTGCTTTCTATTCTTCGCGATGATGATAACATTGCCTCACAGATTTTATTACAGTTTAACATCAATTACG
AGATATTTAAACAGGAGGTTGAAGTGAACAAGAACGGTTTTAGAGACGAAACGCAGAACAGTGCATCAACAGGTGGAGAT
GATGACTACCGCGAAGAAGAATCATTCAGCAGCCCTAAAAAGGTGTCGGACATTAAATCTAAAACCCCGGTTCTGGATAA
TTTTGGAAGAGACCTGACCAAGGCAGCGGAAGAGGGCCGTTTGGATCCTATTGTTGGCCGTGAGAAAGAAATTGAACGCG
TGTCGCAGATATTATCACGACGTAAAAAGAACAATCCGATCCTGATTGGTGAACCTGGTGTAGGTAAATCTGCTATTGCA
GAAGGTCTGGCCCTCCGTATTGTTCAACGTAAAGTTTCCAGGGTACTGTTCAATAAACGTGTGGTAACATTAGACCTGGC
TTCATTAGTTGCCGGCACAAAATACCGCGGACAGTTTGAAGAGCGTATGAAGGCGGTGATGAATGAGCTGGAAAAATCTA
CCGATGTGATCCTGTTTATTGATGAGATCCATACAATTGTAGGCGCAGGTGGTGCTTCAGGTTCTTTAGATGCATCAAAT
ATGTTCAAACCAGCTTTGGCCAGGGGCGAAATTCAATGCATTGGGGCAACTACGCTGGATGAATACCGTCAGTATATAGA
AAAGGATGGGGCTTTGGACCGTCGTTTCCAGAAGGTAATGATCGAGCCGGCTTCACCTGATGAAACCATAGAAATTCTGA
ACCGTATCAAAGAAAAATATGAAGATCACCACGGTGTGACCTATACAGATGAGGCGATTGCTGCCTGTGTGGCGCTTACT
TCAAGGTACATTACCGACAGGTTTTTGCCGGATAAGGCAATTGATGCTTTGGACGAGGCCGGATCAAGGGTGCATTTAAC
AAACATACATGTTCCTGATAACATCATTGCGATTGAGAATAAGATTGAAGAGATCAAGGTTGAAAAAAATAAGGTTGTAA
AAAGCCAGAAATATGAAGAGGCCGCCAAATTAAGAGATACTGAAAAAAATCTGTTGGAAGAGCTTGATCGTGCAAAGGCA
GAATGGGAGGCTGAAACTAAAACGAAACGTTATACAGTTACAGAAGATAATGTTGCAGAGGTGGTTTCAATGATGACCGG
CATTCCATTACAACGTGTTGGACAAACTGATAGTGTAAAGCTGTTAAATATGTACGATACTGTTGCGACCAAGATCATTG
GACAGGATGATGCAATTAAAAAATTGACAAAAGCTATTCAGCGTACCAGAGCGGGATTAAAGGACCCTAAAAAACCGATC
GGTTCGTTTATATTTCTTGGGCCTACCGGTGTTGGTAAGACTGAGCTTGCAAAGGAACTTGCACGTTTCATGTTTGACAG
TGATGATTCACTGATCCAGATTGACATGAGTGAGTACATGGAGAAATTTGCTGTATCGCGTTTAGTAGGTGCGCCTCCGG
GATACGTGGGGTATGAGGAAGGCGGACAGCTGACTGAAAAAGTACGCAGAAAACCGTATGCGGTAATTTTGCTGGATGAG
ATTGAGAAAGCACACCCGGATGTGTTTAATATCCTGTTGCAGGTATTGGATGAGGGACAGCTTACGGATAGTCTTGGTCG
TAAGGTTGACTTCAGAAATACCATCATTATTATGACCTCTAATATCGGGGCCCGTCAGCTGAAAGATTTTGGGCAGGGAG
TAGGTTTTTCTACCGCTGCAAAAAGCAACCAGGCTGATGCACATTCGAGGGGAGTAATTGAAAATGCGTTGAAACGCGCT
TTTGCCCCTGAGTTCCTGAACCGTGTAGATGATGTAGTAGTATTTAATTCACTGGGTAAAGAAGAGATCTTCAAGATCAT
AGACATTGAGTTAAAATCGTTATTTGGTCGTGTACATAATTTAGGTTACGAGGTTAAGCTTACTGAGAAAGCAAAAGAAT
TTATAGCCGATAAAGGGTTTGATTCTAATTTTGGTGCAAGACCGCTTAAACGTGCGATCCAGAAATATCTGGAAGATCCG
ATCGCTGAAGAGATCCTTAAAGGAGAGATCCATGATGGAGATATTCTCGAAATCGATTACAACAAAGAAAGTAATGAAAT
AGTTGTAGAGAATAGAAGTCCGGGTAAGAAAAAGAAAAAAGAAGAGGGAAGTGTAGAATAA

Protein sequence :
MEAKFSPQVKDVISFSREEALRLGHDYIGAEHLLLGLIREGDGMAIKILKSLGVDTSKLRRSIEDSVRGTSSVTVNLGNI
PLTKQAEKVLKITYLEAKIFKSDLIGTEHLLLSILRDDDNIASQILLQFNINYEIFKQEVEVNKNGFRDETQNSASTGGD
DDYREEESFSSPKKVSDIKSKTPVLDNFGRDLTKAAEEGRLDPIVGREKEIERVSQILSRRKKNNPILIGEPGVGKSAIA
EGLALRIVQRKVSRVLFNKRVVTLDLASLVAGTKYRGQFEERMKAVMNELEKSTDVILFIDEIHTIVGAGGASGSLDASN
MFKPALARGEIQCIGATTLDEYRQYIEKDGALDRRFQKVMIEPASPDETIEILNRIKEKYEDHHGVTYTDEAIAACVALT
SRYITDRFLPDKAIDALDEAGSRVHLTNIHVPDNIIAIENKIEEIKVEKNKVVKSQKYEEAAKLRDTEKNLLEELDRAKA
EWEAETKTKRYTVTEDNVAEVVSMMTGIPLQRVGQTDSVKLLNMYDTVATKIIGQDDAIKKLTKAIQRTRAGLKDPKKPI
GSFIFLGPTGVGKTELAKELARFMFDSDDSLIQIDMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTEKVRRKPYAVILLDE
IEKAHPDVFNILLQVLDEGQLTDSLGRKVDFRNTIIIMTSNIGARQLKDFGQGVGFSTAAKSNQADAHSRGVIENALKRA
FAPEFLNRVDDVVVFNSLGKEEIFKIIDIELKSLFGRVHNLGYEVKLTEKAKEFIADKGFDSNFGARPLKRAIQKYLEDP
IAEEILKGEIHDGDILEIDYNKESNEIVVENRSPGKKKKKEEGSVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Phep_1132 YP_003091412.1 ATPase AAA VFG0079 Protein 0.0 52
Phep_1132 YP_003091412.1 ATPase AAA VFG0080 Protein 1e-143 51