|
Name : Dfer_5242 (Dfer_5242) Accession : YP_003089602.1 Strain : Dyadobacter fermentans DSM 18053 Genome accession: NC_013037 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 6318483 - 6321407 bp Length : 2925 bp Strand : - Note : KEGG: mbu:Mbur_1841 HsdR family type I site- specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; Reverse transcriptase thumb; SMART: DNA sequence : ATGGCTAAGCAACCAGAACAGATCCTTGAAGAACAATTAGTTGATCAACTTCAAAAGTTGGGTTATGCTTTTGTGGCCAT CAAAGACGAAAAGCAGCTGATTTCTAACCTCAAATCCCAGCTTGAAAAACATAATAGTATTGTTTTCTCAGATAAGGAAT TCGATAAAGTCCTCAACATCCTCAATAAGGGTTCCGTATTTGAAAAAGCTAAAACACTACGGGAGAAGCAGCATATCGTG CGGGATAATGGGGAGAGCCTGTATTTTGAATTTCTGAACCAGGAACATTGGTGCCAGAACCAGTTTCAGGTGACGCAGCA GGTGAGCATGGAGGGCGTTTATAAGAACCGTTATGATGTGACGCTGCTCATCAATGGTTTGCCACTGGTGCAGATCGAGC TCAAACGGCGCGGGCTGGAACTCAAAGAAGCATTCAACCAGATCAACCGATATCAGCGGCATTCTTTCGGCGTCAATTCG GCGCTGTTTCAGTATGTGCAGATTTTCGTGATCAGCAATGGTGTGAATACCAAGTATTATGCCAATAACAAGAACCAGAC TTTTAAGCAGACTTTTTACTGGAGTGATGTCGCTAATAAACGGCTGACGAATATTCTCAATGGCTTCACGAGCCAGTTTC TGGAACCGTGCCATATCTCCAAAATGATATGCAAATACATTGTCGTCAGCGAAACGAATAAGGTTTTGATGGTGCTTCGT CCGTATCAGTTTTATGCAGTGGAAGCATTGGTGGAGCGGGTGAAGAATTCAGGAATCAAAGGCCCGCATAAAAACGGGTA TATCTGGCATACCACCGGCTCGGGGAAGACATTGACGTCCTTTAAAGCCAGCCAGATCCTGATGCATTTGCCGCAAGTGA AGAAAGTCGTTTTCGTGGTCGACCGGAAAGATCTGGATTATCAGACTAATAAGGAGTTTAACATTTTCAGCAAAGGCAGC GTCGACGGGACGGACGATACCCGGGCGCTGGTGAAGCAGTTTGCCGACGATACCAAGCTCATCGTTACCACGATCCAGAA ACTCAATTCGGCGATCGGCAAAAAGCAATATCTCGATCAGATGGCGCGGATGAAAGATGAGCGCATTATCTTCATTTTCG ACGAATGCCACCGTTCGCAATTTGGTGAAACGCACACGCGGATCAAATCATTTTTCAATAACATACAGCTTTTTGGCTTT ACTGGGACGCCCATTTTTGCAGATAATGCAGTCAAGAATGAATTGGGAAAACGGACCACCACGGAGCTGTTTGGCGAGTG CCTGCACAAGTATGTGATTACGGACGCGATCCGCGACGAAAATGTTTTAAAATTCTCCGTCGAATATGTGGGCAGGTACA AGCAAAAAGACGAAAGCCGTACAAATATAGACATTGAGGTAGAAGACATTGACACCAAAGAACTGATGGATTCGCCGGTT CGTCTGGAAAAGATCGCGGATTACATCCTCGCCAACCATGCACGGAAAACACACAGCCGCGAGTTCACGGGCATGTTTTG CGTGAGCAGTGTGGAAACATTAATCCGCTATTACGAAATTCTGCAGGCTAAAAAACTCGCCGGGCAGCATAACCTCAAAA TTGCCACGATTTTCAGCTATACAGCCAATGAAGATGATCAGGATGCAAACGGATCGATGAGCTATGAATCCGATCCGCCT CCACTGCGAATGGTGGCCGATCCTCCGGCCCCTTACCTGAAAAAAGGCGAAGAGGCTGCGCCGACTGCACCTGTGATCAT CAATAAGCACAGCCGGGAAAAGCTGGATGAATACATCGGGCATTACAACAAAATGTTTGGAACGGCTTACTCCACCAAAG ACAGCGTTTCATTTTACAATTATTACAACGACGTTTCCAAAAAGGTTAAGGAAAAGCAGATCGACATTCTGCTGGTTGTA AACATGTTTCTGACAGGCTTCGACAGCAAGAAGCTGAACACGCTTTACGTCGATAAAAACCTGAAATACCACGGACTGAT CCAGGCTTATTCGCGGACCAACCGGATCGATAATGATGTGAAATCACAGGGGAACATCATTGTCTTTCGCAACCTGAAAA AGGCCACCGACGAAGCCATTGCATTGTTCAGTAATAAGGATGCGAAGGACATCATCATCATGGAGCCGTATGAGGATTAT GCCGAGAAGTTTGGCGCTGCATTCGATAAGTTACTCACGGTTGCTCCGACTGTCGAAAGCGTAAATCAGCTGACAACCGA ATACGACGAGCTGGAATTCATCAAGGCATTCCGTGAGCTGATGCGGATCAAGAACGTGCTGACCACATTTGCCGATTTCA AATGGGAAGACCTGGCGATGAGCGAGCAGCTCTTTGAGGATTACAAAAGCAAATACCTCGACCTGCATGACAAGGTGAAG TTCGATACGCAGAAAGAAAAGGTATCGATCCTGGAAGATGTGGATTTTGAACTGGAACTCATCCACCGCGACGAGATAAA TGTCGCCTACATTCTGAAATTGCTGGCAAACTTGAACAATGGCAGCAAGGCAGACCAGGAAAAGAAACGCAAAGAAATCA TCGATCTCCTCACCGGGGAAGCCAACCTGCGCAGTAAACGCGAACTGATCGAAAAATTCATTGCCGAAAACCTGCCCCGG ATAGAAGACAATGAAACACTGCCCGATGAATTTGAGAAATTCTGGAATGAAGAGCAGGTGAAGGCATTCAAACAATTGGT GGAGGAAGAAAAACTTTCCGAACCCAAAACCGAGAAACTGATTGAAAGCATCCTCTTCTCAGAACGCGAGCCATTACGGG AGGAAGTACTTGGCTTATTGGAAGGAAATATGCCAACGGTTTTACAAAGGAAGAAAGTTGGGGAAAGAGTTTTGAGTAAG ATCATGGGGTTTATTGAAACTTTTGTTGAGGGGATTGTTGGGTGA Protein sequence : MAKQPEQILEEQLVDQLQKLGYAFVAIKDEKQLISNLKSQLEKHNSIVFSDKEFDKVLNILNKGSVFEKAKTLREKQHIV RDNGESLYFEFLNQEHWCQNQFQVTQQVSMEGVYKNRYDVTLLINGLPLVQIELKRRGLELKEAFNQINRYQRHSFGVNS ALFQYVQIFVISNGVNTKYYANNKNQTFKQTFYWSDVANKRLTNILNGFTSQFLEPCHISKMICKYIVVSETNKVLMVLR PYQFYAVEALVERVKNSGIKGPHKNGYIWHTTGSGKTLTSFKASQILMHLPQVKKVVFVVDRKDLDYQTNKEFNIFSKGS VDGTDDTRALVKQFADDTKLIVTTIQKLNSAIGKKQYLDQMARMKDERIIFIFDECHRSQFGETHTRIKSFFNNIQLFGF TGTPIFADNAVKNELGKRTTTELFGECLHKYVITDAIRDENVLKFSVEYVGRYKQKDESRTNIDIEVEDIDTKELMDSPV RLEKIADYILANHARKTHSREFTGMFCVSSVETLIRYYEILQAKKLAGQHNLKIATIFSYTANEDDQDANGSMSYESDPP PLRMVADPPAPYLKKGEEAAPTAPVIINKHSREKLDEYIGHYNKMFGTAYSTKDSVSFYNYYNDVSKKVKEKQIDILLVV NMFLTGFDSKKLNTLYVDKNLKYHGLIQAYSRTNRIDNDVKSQGNIIVFRNLKKATDEAIALFSNKDAKDIIIMEPYEDY AEKFGAAFDKLLTVAPTVESVNQLTTEYDELEFIKAFRELMRIKNVLTTFADFKWEDLAMSEQLFEDYKSKYLDLHDKVK FDTQKEKVSILEDVDFELELIHRDEINVAYILKLLANLNNGSKADQEKKRKEIIDLLTGEANLRSKRELIEKFIAENLPR IEDNETLPDEFEKFWNEEQVKAFKQLVEEEKLSEPKTEKLIESILFSEREPLREEVLGLLEGNMPTVLQRKKVGERVLSK IMGFIETFVEGIVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 0.0 | 44 |
