Gene Information

Name : Dfer_4838 (Dfer_4838)
Accession : YP_003089204.1
Strain : Dyadobacter fermentans DSM 18053
Genome accession: NC_013037
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5846840 - 5847517 bp
Length : 678 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bfs:BF2459 putative ABC transport system, ATP- binding protein

DNA sequence : 
ATGATTAAAATTAACAACATGCACAAGGTGTTTTCTACCGAAGAAGTAGAAACAACTGCCCTCAACGGGATTGACCTGGA
AATTAAGGATGGCGAGTTTGTGGCCATCATGGGACCTTCCGGTTGCGGGAAATCGACGCTGCTGAATATTCTCGGACTGC
TCGATAACCCCAGCGAAGGTTCTTACGAATTCTACGGAACGGAGGTCGCCAAAATGTCCGAACGCCAGCGGGCACAGATC
CGCAAGGGCAATATCGGCTTCGTTTTCCAGAGCTTCAACCTGATCGATGAGCTGACGGTTTATGAAAACGTGGAGCTGCC
GCTGCTTTACCTCAAAACGCCCCCGGCAGAAAGAAAGGAAAAGGTGGAGGCCGCGCTCACCCGCATGAATATGATGCACC
GCCGCAACCACTTCCCGCAACAGCTATCGGGTGGTCAGCAACAGCGTACCGCCATTGCCCGCGCCGTGGTAGCAACCCCG
AAAACAATCCTGGCCGATGAGCCGACCGGTAACCTCGACTCTAAAAACGGCGAGGAAGTAATGAACCTGCTCAGCCAGCT
GAATGCAGCCGGAACGACGATCCTCATGGTAACGCACTCGCCTTACGACGCCGGCTTTGCACACCGCGTGGTGAACCTGT
TCGATGGCAAGATCGTGACCGAGAAAATACATGTTTAG

Protein sequence : 
MIKINNMHKVFSTEEVETTALNGIDLEIKDGEFVAIMGPSGCGKSTLLNILGLLDNPSEGSYEFYGTEVAKMSERQRAQI
RKGNIGFVFQSFNLIDELTVYENVELPLLYLKTPPAERKEKVEAALTRMNMMHRRNHFPQQLSGGQQQRTAIARAVVATP
KTILADEPTGNLDSKNGEEVMNLLSQLNAAGTTILMVTHSPYDAGFAHRVVNLFDGKIVTEKIHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 6e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_4838 YP_003089204.1 ABC transporter NC_008702.1.4606598. Protein 4e-43 50
Dfer_4838 YP_003089204.1 ABC transporter NC_012469.1.7686878. Protein 7e-51 47
Dfer_4838 YP_003089204.1 ABC transporter CP001581.1.gene798.p Protein 8e-36 45
Dfer_4838 YP_003089204.1 ABC transporter CP001581.1.gene598.p Protein 2e-34 42
Dfer_4838 YP_003089204.1 ABC transporter NC_012469.1.7686946. Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_4838 YP_003089204.1 ABC transporter VFG0869 Protein 1e-24 42