Gene Information

Name : Dfer_0453 (Dfer_0453)
Accession : YP_003084887.1
Strain : Dyadobacter fermentans DSM 18053
Genome accession: NC_013037
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 517241 - 517918 bp
Length : 678 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bfr:BF0209 two-component system response regulator

DNA sequence : 
ATGAAACTGTTACTGATCGAGGACGAACCAAAAACATTGCAGTCGATACGGCAAGGGCTGGAAGAGAACGGCTATGAAGT
GGACATTGCTTACGACGGGTTGATCGGTAAACAATTGGCACGAGGCAATGTTTACCAACTCATTATCAGCGACATCATCA
TCCCGGGCATTAACGGGATCGAACTTTGCCGGGAGATCCGCAGCTGGGGCGACGAAACGCCGATCCTGATGCTGACAGCC
CTTGGCACGACGGACGATAAGGTGACGGGCCTCGACGCAGGCGCGGACGATTACCTGGTCAAACCATTCGAATTCAAAGA
ACTTCTCGCACGCGTACGCGCACTCACGAAGCGCGGCACCACGGTTTCGCACACCGCCCAGGTATTGCGCTTTGCCGACC
TGGAAGTTTCGCTCGATGCGAAAACTGTTTATCGATCGGGGAACAAGATTAATCTGACGGCGCGCGAATTCAATTTGCTG
GTGTATCTCATCCGCAACCAGGGGCGCGTTATTTCGAAGGTCGAGATAGCGGAGCAGGTCTGGGACATTGGATTCGACAC
CGGCACCAATGTAATTGAAGTATATGTAAATTACCTTCGCAAGAAGATTGACAAGGATTACCCGGTAAAGCTCATCCACA
CGCAATTCGGGATGGGCTATGTGCTCAAAGTGGAATAA

Protein sequence : 
MKLLLIEDEPKTLQSIRQGLEENGYEVDIAYDGLIGKQLARGNVYQLIISDIIIPGINGIELCREIRSWGDETPILMLTA
LGTTDDKVTGLDAGADDYLVKPFEFKELLARVRALTKRGTTVSHTAQVLRFADLEVSLDAKTVYRSGNKINLTAREFNLL
VYLIRNQGRVISKVEIAEQVWDIGFDTGTNVIEVYVNYLRKKIDKDYPVKLIHTQFGMGYVLKVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-35 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0111 Protein 7e-45 52
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-40 50
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0083 Protein 7e-42 50
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0638 Protein 3e-37 50
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-41 47
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0308 Protein 1e-36 46
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-38 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-35 45
Dfer_0453 YP_003084887.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-40 42