Gene Information

Name : Dfer_3983 (Dfer_3983)
Accession : YP_003088352.1
Strain : Dyadobacter fermentans DSM 18053
Genome accession: NC_013037
Putative virulence/resistance : Resistance
Product : cystathionine gamma-synthase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 4832248 - 4833393 bp
Length : 1146 bp
Strand : -
Note : PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: gfo:GFO_3443 Cys/Met metabolism pyridoxal- phosphate-dependent enzyme

DNA sequence :
ATGAATTTCGCAACCAAAGCCATCCACGCGGGCGTCGAGCCGGACCCTGCTACCGGCGCCATTATGACGCCCATTTACCA
AACCTCCACCTACGTGCAGGAAAGCCCCGGCAAGCACAAAGGCTATGAGTACGGCCGCAGCAGCAACCCGACGCGCACCG
CATTGCAAACCGCTTTGGCGGCGTTGGAAAACGGCAAACACGGCCTTTGCTACGCTTCCGGCCTGGCGGCCACCGACGCT
GTGCTGAAACTTTTCCGGCCCGGCGACGAAATCATCGCCCCTAGCGACATTTACGGTGGCACCTACCGCCTTATGAAACG
CATTTTCGAGCCGCTGGGATTGGTTTTTCGATTTATTGACCTGGAAGAAGTGCCCGCTATCGCTCAGCTGATTTCAGCAA
AAACGCGAATGGTGTGGCTCGAAACGCCTACCAATCCACTGCTGAAAATCATTGATATCGAGCAGGTAACCCGCATTTGC
AAGGAACGGAACGTGCTTACCTGCGTGGACAATACTTTTGCATCGCCCTATCTGCAAAACCCGCTCGACCTCGGCGCCGA
TATGGTGATGCATTCGGTTACCAAATACCTTGGCGGCCATTCCGACACGGTAATGGGCGCGCTGGTCACCAGCAACGACG
AGCTGGCGGCGCAATTGAAGTTCATTCAGAACGCCAGCGGCGCGGTACCGGGGCCGCAGGACTGCTTTCTGGTATTGAGG
GGATTAAAAACGCTGCACATCAGAATGCAGCGCCATTGCGAAAATGCCGCGCAGGTGGCGGTGTGGCTTTCAGCACATCC
CAAAGTCGGCAAAGTGTATTACCCCGGCTTGCCCGCTCATCCCGGCCACGAGCTGGCGGCACGGCAAATGCGCGGGTTTG
GCGGCGTCGTATCATTTGAATTGAAAGATGACAGTTATCAAACGGCCGTGCGGACGATGGAAAACCTGCAAATATTCGCA
TTGGGCGAGTCGCTGGGCGGTGTCGAATCGCTGTGCACGCATCCTGCAAGCATGTCGCACGGCGGAATGCCGCGGGAAGA
GCGGCTGAAAATAGGCTTGAAAGACACATTGATCCGGCTTAGCGTGGGAATTGAGGATGTAGAAGATCTCATCGCCGACC
TTGATCAGGCGATCGGCACCGATTAG

Protein sequence :
MNFATKAIHAGVEPDPATGAIMTPIYQTSTYVQESPGKHKGYEYGRSSNPTRTALQTALAALENGKHGLCYASGLAATDA
VLKLFRPGDEIIAPSDIYGGTYRLMKRIFEPLGLVFRFIDLEEVPAIAQLISAKTRMVWLETPTNPLLKIIDIEQVTRIC
KERNVLTCVDNTFASPYLQNPLDLGADMVMHSVTKYLGGHSDTVMGALVTSNDELAAQLKFIQNASGAVPGPQDCFLVLR
GLKTLHIRMQRHCENAAQVAVWLSAHPKVGKVYYPGLPAHPGHELAARQMRGFGGVVSFELKDDSYQTAVRTMENLQIFA
LGESLGGVESLCTHPASMSHGGMPREERLKIGLKDTLIRLSVGIEDVEDLIADLDQAIGTD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 8e-83 48
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 6e-84 48
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 2e-61 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_3983 YP_003088352.1 cystathionine gamma-synthase BAC0207 Protein 1e-67 41