Gene Information

Name : Dfer_3378 (Dfer_3378)
Accession : YP_003087753.1
Strain : Dyadobacter fermentans DSM 18053
Genome accession: NC_013037
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : -
Position : 4134115 - 4135554 bp
Length : 1440 bp
Strand : +
Note : KEGG: chu:CHU_1400 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta

DNA sequence :
ATGTCTTCCAAAAAAACCAGAATTGTTGCAACCGTAGGCCCTGCCTCGGAATCGAAAGAAACGTTATATGCATTGGCCAA
AGCAGGAGTGAACGTGTTCCGTCTCAACTTCTCCCACGGCACCCACGCCGACCACCTGCAAAGACTCACCAATATCCGCG
AGATCAACGAAGAGCATGGCCTTAACCTCGCCATTCTGCAAGATTTACAAGGGCCGAAAATCCGTATCGGTCTGGTAGCT
GAGAAGGACGGCGTTCTGATCGAGGCAGGCAAAAAACTGATCCTTTCCAACACCGAGGTGCTGGGTACTGCCGAGAAAGT
GAGCACACCTTACGACGGGATGTACAATGATGTGAAGATCGGTGACCGCGTGTTGATGGATGATGGTAAACTGGAAGTGC
TGGTAACCGGCATCGAAGGATCGGATGTGATCACGGAGGTGATTTATGGCGGTTATCTGAAATCTAAAAAAGGTGTTAAC
CTGCCAAATACAAAGGTTTCGATGCCTTCGGTAACGCCGAAAGACTGGGAAGACCTGGACTTTGGTCTGGAAAACAATGT
AGAATGGATCGCATTGTCGTTCGTTCGCACGGCGGAGGAAATCCTGAAAGTAAAAGAATATATTGCCAACAAAGGCAAAT
TTGCCCGCGTGGTAGCGAAAATCGAGAAGCCTGAGGCGATCCTGAATATCGACGAGATCATCGAAGCAACAGACGCGATT
ATGGTTGCGCGCGGTGACCTCGGGGTGGAATTGCCTGCGGAAGAGGTTCCGATGATCCAGAAAATGATTGTGGAGAAATG
TAACCGTGCCGGCAAGCCTGTAATCGTGGCTACGCAAATGCTGGAATCGATGATCGAGAGCCCGCGCGCCACCCGCGCCG
AGCTGAACGACGTAGCGAACTCGGTACTTGACGGCGCTGACGCTGTAATGCTTTCGGCTGAAACAGCTTCCGGTAAATAT
CCGATCCTGGCCGTTGAAAGCATGAGCCGCACCATTGAAAAAGTGGAAGCGTCTAGCAAAAGCATTTATTTCAAACACCA
CGCGGCAGTAAACGACACGCCTGGTGCCTACAAACTGAACGACAATGTGGTAATGAGCGCATGCCGTCTGGCGCGCGATA
CCCAAGCTGCGGCGATCATCGGCATCACGCGCTCGGGCTACACATCATTCCGCCTGTCGCACCACCGCCCGAAAGCCAAC
TTGCTGATTTTCACATCCAACAGAATGCTGATGAACCAGCTGGCGCTTTATTGGGGCACCAAGGTATTCTACTACGACCG
CGACCAGGGTGTTTCTACCGACGATCTGATCGAAGACATCAAAACTTTCCTCGTTGAAAAAGGCGAGCTGCAAAAAGGTG
ATGTGTTCATCAATACACTGAGCATGCCGGTTTCAAGACAGCGCAAGACGAATACGGTGAAATTGAGCGTGGTGGAGTAA

Protein sequence :
MSSKKTRIVATVGPASESKETLYALAKAGVNVFRLNFSHGTHADHLQRLTNIREINEEHGLNLAILQDLQGPKIRIGLVA
EKDGVLIEAGKKLILSNTEVLGTAEKVSTPYDGMYNDVKIGDRVLMDDGKLEVLVTGIEGSDVITEVIYGGYLKSKKGVN
LPNTKVSMPSVTPKDWEDLDFGLENNVEWIALSFVRTAEEILKVKEYIANKGKFARVVAKIEKPEAILNIDEIIEATDAI
MVARGDLGVELPAEEVPMIQKMIVEKCNRAGKPVIVATQMLESMIESPRATRAELNDVANSVLDGADAVMLSAETASGKY
PILAVESMSRTIEKVEASSKSIYFKHHAAVNDTPGAYKLNDNVVMSACRLARDTQAAAIIGITRSGYTSFRLSHHRPKAN
LLIFTSNRMLMNQLALYWGTKVFYYDRDQGVSTDDLIEDIKTFLVEKGELQKGDVFINTLSMPVSRQRKTNTVKLSVVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 3e-69 43
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 3e-69 43
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 7e-69 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_3378 YP_003087753.1 pyruvate kinase VFG0479 Protein 1e-69 43