Gene Information

Name : Dfer_1950 (Dfer_1950)
Accession : YP_003086340.1
Strain : Dyadobacter fermentans DSM 18053
Genome accession: NC_013037
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2386527 - 2387504 bp
Length : 978 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: met:M446_2520 integrase catalytic region

DNA sequence : 
ATGGCCACTGACAGCCTGAGAGCAGAAGCAAGGCAGAAATGGGTTATGCTCTATAGACAGATCGGAAACATATCGGTTGC
TGCCAGGAGGTGCGGAATTGCTAGATCTACGTTACAACGTTGGATAAAACGTGAGGATGAAAATCTCTTTACAGATCGGT
CTCACCGTCCGCATCGGCTGGGGCGACAAAAGTATCGTCCTGAAGACGAGGCCCTCGTACTTAAGGTACGCGATGAATTC
AAGTATGGAAAACTCAGAATCTGCTCTCATCTGTTCAGGCTCCATGATTTGAAGATTTCAACTTCTACCGTAGCGAGAAT
ACTCGAAAAGCATTCAGTTGCACCTATTCGTCGATTTACTAAACATTCCCCTCCAATTCGATATGCTAAGCTCGTTCCTG
GCGAACGTGTACAGTTAGATGTCTGCAAGATCAGAGCTGGCCTGTATCAATACACGGCGATTGATGATTGTACCCGCCTA
AGGGTGTTGAAACTTTACACGCGTCGGTCGGCCGCCAATTCAATCGATTTTCTGGACAAGCTTATTGATGAATTTCATTA
CCCCATTCAACGTATTCAAACGGACAGAGGACAGGAGTTTTTTGCGGTCGCATTTCAGCAGAAGTTGATGGATTACTGCA
TCAAGTTTCGTCCCATAAAACCCAGGTCACCACATTTAAACGGCAAAGTTGAACGAAGCCAGCAGACAGATCTCCAGGAA
TTTTACACAACAGTTGACTTACGAGACCCCCAATTGGACGACAAACTCGCTCAATGGCAATTTCACTACAATTACTTCCG
CCCACACAGCTCGTTGGGCGGTAAGACTCCGATCGAATTTGCCTCCGAACACTCTGCTAAGGCACCTTTCTGGGACGAAA
TCGAGGCCATATACGACGAAACAAAGGAACGCATTAGAGAACAAGCCTACTGGCGAGACCTGCGGATGGCAAAGTTGACT
AAGAAAAGCAAAACATAG

Protein sequence : 
MATDSLRAEARQKWVMLYRQIGNISVAARRCGIARSTLQRWIKREDENLFTDRSHRPHRLGRQKYRPEDEALVLKVRDEF
KYGKLRICSHLFRLHDLKISTSTVARILEKHSVAPIRRFTKHSPPIRYAKLVPGERVQLDVCKIRAGLYQYTAIDDCTRL
RVLKLYTRRSAANSIDFLDKLIDEFHYPIQRIQTDRGQEFFAVAFQQKLMDYCIKFRPIKPRSPHLNGKVERSQQTDLQE
FYTTVDLRDPQLDDKLAQWQFHYNYFRPHSSLGGKTPIEFASEHSAKAPFWDEIEAIYDETKERIREQAYWRDLRMAKLT
KKSKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC12272.1 putative transposase Not tested VPI Protein 7e-66 49
unnamed AAK20746.1 putative transposase Not tested VPI Protein 7e-66 49
unnamed AAK20775.1 putative transposase Not tested VPI Protein 7e-66 49
VC0395_A0341 YP_001216297.1 transposase Not tested VPI-1 Protein 9e-66 49
VC0817 NP_230466.1 transposase Not tested VPI-1 Protein 9e-66 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dfer_1950 YP_003086340.1 Integrase catalytic subunit VFG0081 Protein 4e-66 49