Gene Information

Name : etpF (ECSP_6005)
Accession : YP_003082139.1
Strain :
Genome accession: NC_013010
Putative virulence/resistance : Virulence
Product : type II secretion protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 7122 - 8345 bp
Length : 1224 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGTTGTTTCATTATCAGGCATCAGATATTCACGGTAGAAAACGCAGTGGCATTCTGGAGGCGGATTCGGCCCGACA
TGCCCGTCAGTTGCTGCGTGAGCAGGCGCTTATTCCAGTCAGGTTGGATGAGAAACAGGTCCATCACAAGCACTCACTGC
GGAGTATCCTGAGGTTTCGTCCGCGCGGGGGGAGCAGCGCCGAACTCGCGTTACTGACACGGCAGTTAGCCACACTAGTG
GCCGCATCTCTGCCGCTTGAAGAGGCGCTGGATGCGTTGTTGAGGCAGAGTGAAAAACCGCGTCAGCGGAACTTAATCGC
TGCCGTGCGCACCAAGGTTCTCGAGGGACATTCCTTGGCCGCGGCGATGGGCATGTTTCCAGGTACGTTTGAGCGTCTTT
ATTGTGCGATGGTGGCGGCGGGGGAAACATCCGGTCGTTTGGACGTGGTGCTCAGTCGTCTGGCTGACTATACCGAGCAG
CGCCAGATCATGCGAAACCGTCTACTCCAGGCATTGCTCTATCCTTGTGTTCTGACGTTGGTGGCGGTTGGGGTTATTGC
CATTCTGCTTACTGCGGTTGTGCCGAAAGTGGTTGAGCAGTTTATTCATATGAAACAGACCCTTCCCTTATCTACCCGCG
TACTGATGGGGGCTGCTGAGGTGAGCCAGACTTGGGGCCCGTGGCTGTTACTGGCCGCAGCGCTGGGCGGGATAGCGGGG
CGCATGATATTACATCAGCCCTCCCAGCGTCTGGCTTTTCATCATCTGCTGTTGCGGCTGCCGGTCGTGGGGCGCATATC
GCGCGGTCTGAATACCGCACGTTATGCCCGCACGCTGAGCATTCTTAATGCCAGTGCGGTACCGCTGCTCCAGGCGATGC
ACATCAGTGGTGACGTACTGAGTAATGACTGGGCCCGTCATCAGTTAGCTACCGCGGCCGAGTTGGTTAGGGAAGGGGTC
AGCCTGCATCAGGCACTGGAGCAGACTTCGCTGTTTCCGCCTATGATGCGGCACATGATTGCCAGCGGTGAAAATAGTGG
CGAACTCGACAGCATGTTGGAACGGGCCGCCGACAATCAGGATCGTGAGTTCAGCACACAGATGCAACTGGCGCTGGGAT
TGTTTGAACCGCTGTTGGTGGTGGGTATGGCCGGGGTCGTTTTGTTTATTGTTCTGGCAATTCTGCAGCCGCTCCTGCAG
CTCAACAACATGATGAATATGTGA

Protein sequence : 
MALFHYQASDIHGRKRSGILEADSARHARQLLREQALIPVRLDEKQVHHKHSLRSILRFRPRGGSSAELALLTRQLATLV
AASLPLEEALDALLRQSEKPRQRNLIAAVRTKVLEGHSLAAAMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQ
RQIMRNRLLQALLYPCVLTLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLLLAAALGGIAG
RMILHQPSQRLAFHHLLLRLPVVGRISRGLNTARYARTLSILNASAVPLLQAMHISGDVLSNDWARHQLATAAELVREGV
SLHQALEQTSLFPPMMRHMIASGENSGELDSMLERAADNQDREFSTQMQLALGLFEPLLVVGMAGVVLFIVLAILQPLLQ
LNNMMNM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 5e-94 56
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-92 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
etpF YP_003082139.1 type II secretion protein VFG2049 Protein 4e-92 55
etpF YP_003082139.1 type II secretion protein VFG0181 Protein 2e-82 51
etpF YP_003082139.1 type II secretion protein VFG1870 Protein 3e-73 43