|
Name : lpfC (ECSP_4774) Accession : YP_003080567.1 Strain : Escherichia coli TW14359 Genome accession: NC_013008 Putative virulence/resistance : Virulence Product : fimbrial usher Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4759775 - 4762309 bp Length : 2535 bp Strand : - Note : - DNA sequence : ATGGCCTCTTCGCATCTTTTCATTACGCTTGCATCGGGCATATGTCTGCTCTGTTCCATATCTGCTTTTGCCCGGGATAG CTTGTTCAACCCCAGATTACTGGAACTGGATCATCCTGCGGATAATATTGATATTCACCAGTTCAACCGTTCGAATACCT TACCTGCGGGAACATACAAAGTTGATGTGATGATCAACGGCATGCTCTTCGAACGCCAGGAAGTTAAATTCGCCCAGGAT AACCCTGATGCTGAACTCCACCCATGCTACGTGGCGATAAAAAACGTGCTGGCGACCTATGGTATAAAAGTTGATGCGAT AAAATCTCTGGCGAATGTTGATGACAAAACATGCGTAAATCCAGTTCCGCTGATCGACGGGGCTACCTGGTTACTGGACG CCAGTAAACTTGCATTGAATATTACTATTCCGCAAATTTATCTCAACAATGCAGTTAATGGTTATATCAGCCCTTCCCGT TGGGATCAGGGGATCAATGCCATGATGATGAATTATGATTTTTCGGCATCGCATACCATCCGGTCAAATTATGACGACGA CGATGACAGTTATTATCTGAATTTGCGTAATGGTATTAATTTAGGCGCATGGCGTTTTCGTAATTACAGCACCCTGAATT CTTATGACGGTAATGTGGACTACCATTCCGTCAGTAATTACATTCAGCGCGACATCATGGCATTACGTAGCCAGATTATG ATTGGCGATACCTGGACGGCAAGCGATGTATTTGATAGTACACAGGTGCGTGGCGTGCGGCTGTATACCGATGACGATAT GTTGCCCTCCAGCCAGAACGGCTTTGCGCCAGTGGTACATGGGATTGCGAAAACTAACGCCACGGTGATCATCAAACAAA ACGGCTACGTTATTTATCAATCAGCCGTACCACAGGGCGCATTTGCCCTCACCGACTTAAACACGACCAGTAGCGGCGGC GATCTCGATGTCACTATCAAAGAAGAAGATGGCAGCGAGCAGCACTTTATTCAGCCATTTACTTCACTGGCCATTCTCAA GCGTGAAGGTCAGACCGATGTAGACCTTAGCATTGGAGAAGTGCGCGACGAAAGCGGCTTTACGCCTGAGGTCTTGCAGT TACAAGCAATGCACGGTTTCCCTTTGGGAATAACTTTGTATGGCGGAACACAATTGGCAAATGATTACGCTTCTGCCGCG CTGGGTATTGGTAAAGATATGGGGGCGCTGGGCGCGATTTCTTTTGACGTGACTCATGCCCGCTCGCAGTTTGACTACGA CGATAATGAGAGTGGTCAATCGTATCGTTTTCTCTATTCCAAACGTTTTGAAGACACCAATACCACCTTTCGTCTGGTGG GTTATCGCTACTCTATGGAGGGGTTCTACACCCTCAATGAATGGGTGTCGCGACAGGATAATGATTCTGATTTCTGGGTA ACGGGCAACCGTCGCAGCCGCTTCGAAGGTACCTGGACGCAATCTTTCACGCCAGGCTGGGGCAATATTTATTTAACATT CAGTCGACAGGAATACTGGCAGACCGATGAGGTCGAACGTTTATTACAGTTCGGCTATAACAACAACTGGCGAAACATCT CCTGGAACGTTTCCTGGAACTATACGGACTCGATCAAGCGCTCATTGGGCAACCATCATGATGATAACAATGATGATTTC GGCAAAGAACAGATTTTCATGTTCTCAATGTCGATACCGCTATCGTGCTGGATGGAAGACAGCTACGTCAACTATTCGTT AACGCAAAACAACCACCATGAAAGCACGATGCAGGTCGGTCTGAACGGAACGATGCTGGAAGGGCGTAACCTGTCTTATA ACGTACAGGAATCGTGGATGCACTCTCCTGATGACTCCTACAGCGGCAATGCCGGAATGACCTATGACGGGACTTATGGC TCGGTCAATGGTAGCTATTCCTGGAGCCGTGACTCCCAACATTTTGATTATGGCGCCAGAGGCGGCGTGCTGGTGCATAG TGACGGAGTGACCTTCTCGCAGGAACTGGGCGAAACGGTGGCATTGGTCAAAGCGCCGGGCGCAGAAGGCCTGTCCATTG AAAACGCCACCGGGATTTCTACCGACTGGCGTGGTTATACCGTAAAAACGCAGCTTAGCCCGTATGACGAAAACCGCGTG GCATTGAACAGCGACTATTTCTCCAAAGCCAATATTGAACTGGAAAACACCGTCATCAACCTGGTACCAACGCGCGGTGC GGTGGTGAAAGCCGAATTTGTCACCCATGTCGGTTATCGCGTGCTATTTAACGTCCGCCAGGTCAACGGTAAACCAATAA TGTTTGGCGCGATGGCAACCGCCTCTCTCGAAACGGGCACAGTCACCGGGATTGTCGGTGATAACGGCGAACTGTATCTC TCCGGGATGCCTGAAAAAGGCGAGTTTTTATTGAGTTGGGGACAAGCTGCGGATGAAAAATGTAAGGCGGCCTATCACAT CACCCATAAACCTGATGATACCAGCCTGGTTCAAATGGATGCGATTTGTCGCTAA Protein sequence : MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQD NPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSR WDQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGG DLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAA LGIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDF GKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYG SVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYL SGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 64 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpfC | YP_003080567.1 | fimbrial usher | VFG0454 | Protein | 1e-142 | 41 |
