Gene Information

Name : rorf1 (ECSP_4705)
Accession : YP_003080502.1
Strain : Escherichia coli TW14359
Genome accession: NC_013008
Putative virulence/resistance : Virulence
Product : LEE-encoded type III secretion system factor
Function : -
COG functional category : S : Function unknown
COG ID : COG3204
EC number : -
Position : 4681889 - 4682707 bp
Length : 819 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAGAAAACCATTGATTGCATTTTTCATCGCGATATTTATTGCACTAACCATATTAATATTATTTCCATTTAATTG
TACTTACAAAAAATCACCTCAAGAACACTCACTTTCATTTATAAAACAATTACCAAATACGGTGAACTTATCATCTCTTA
CTTATAATAAAGAGGATGATTTCCTGTATGCCACCCAGAATAGCCCTGCACAGCTACTTAAAATAACCAAAAGTGGCGAC
ATCATGGACAGAGCCCCACTGCCTTTTATCTCTGATGCCGAAACAATTGAACACATACAAGGGAACATTTTTGCTGCAGT
AGACGAAAAGACTTCTGAACTATTCTTTTTTACAGTTACAAAAGATATGCATATCTCCTTTCGAAATAAAATTCAGTTAG
AAAAATTCAATAAAAAGAATAGAGGGTTTGAAGGGCTGGCATGGAAAGCAGATGATCGGATGCTGTTTGTCGCAAAAGAA
AGACGCCCAAGTAAAATATTTATATATCAACTTTCTCCAGACCTGCTGAGTGTAAAGCAAGCAACTATTCCAGAGGCACT
AAATGATATACGTGTTAACGATATATCCGGCCTGGCCTTTAATAATGAAAGTCTGATGATTCTGTCCGATGAATCGCGTA
AATTACTCAAGTTTAACCTGACAGAGATGTCTTTCATTGAGATGCTTGACCTGACAAAAGGAAATCATTCTCTGACCAGT
GATTTGCCCCAACCTGAAGGAATTGTAACTCTGCCTGATGAAAGCATTTATGTTGCCAGTGAACCTGATATCCTCGCGAA
ATTTGTCCCTAATAAGTAA

Protein sequence : 
MKRKPLIAFFIAIFIALTILILFPFNCTYKKSPQEHSLSFIKQLPNTVNLSSLTYNKEDDFLYATQNSPAQLLKITKSGD
IMDRAPLPFISDAETIEHIQGNIFAAVDEKTSELFFFTVTKDMHISFRNKIQLEKFNKKNRGFEGLAWKADDRMLFVAKE
RRPSKIFIYQLSPDLLSVKQATIPEALNDIRVNDISGLAFNNESLMILSDESRKLLKFNLTEMSFIEMLDLTKGNHSLTS
DLPQPEGIVTLPDESIYVASEPDILAKFVPNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z5143 NP_290290.1 hypothetical protein Not tested LEE Protein 5e-113 100
unnamed AAC31535.1 L0056 Not tested LEE Protein 4e-113 100
ECs4591 NP_312618.1 hypothetical protein Not tested LEE Protein 5e-113 100
unnamed ACU09480.1 hypothetical protein Not tested LEE Protein 4e-113 100
rorf1 AAC38362.1 rOrf1 Not tested LEE Protein 1e-112 99
ECO111_3730 YP_003236066.1 hypothetical protein Not tested LEE Protein 7e-111 98
unnamed AAL57582.1 unknown Not tested LEE Protein 4e-103 91
ECO103_3640 YP_003223497.1 T3SS component Virulence LEE Protein 4e-103 91
unnamed CAI43896.1 hypothetical protein Not tested LEE Protein 3e-103 91
unnamed AAL57521.1 unknown Not tested LEE Protein 1e-102 90
unnamed AAK26694.1 unknown Not tested LEE Protein 9e-103 90
st03 CAC81841.1 ST03 protein Not tested LEE II Protein 9e-103 90
ECO26_5249 YP_003232131.1 hypothetical protein Not tested LEE Protein 1e-102 90
unnamed AAL06388.1 unknown Not tested LEE Protein 1e-98 87

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rorf1 YP_003080502.1 LEE-encoded type III secretion system factor VFG0834 Protein 2e-113 100
rorf1 YP_003080502.1 LEE-encoded type III secretion system factor VFG0708 Protein 7e-113 99