Gene Information

Name : lpfB (ECSP_4541)
Accession : YP_003080339.1
Strain : Escherichia coli TW14359
Genome accession: NC_013008
Putative virulence/resistance : Virulence
Product : fimbrial chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 4515906 - 4516592 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAGTAAATTTGTTGCGTTGGCTCTCTCTCTGTTCCTTTCACAGTCAGTTCTGGCGGGTGGCGTCGGACTTAGCTC
TACTCGCGTAATTTATGATGGCAGTAAGAAAGAAGCCTCGCTGACCGTACAGAATAAAAGTAAGACGGAAGAGTTTCTTA
TCCAATCCTGGGTGGATGATGCCGCGGGCAGCAAAAAAACACCGTTTATTATTACGCCCCCACTATTCAAGCTTGATCCA
GAAAAGAACAATATTTTGCGTATTGTGAATATTACGCCCGGCCTGCCTCAGGATCGCGAATCGGTCTACTGGGTTAATGT
GAAAGCCATTCCATCTAAAAGTGACGACAGCGAAAACAAAAATGTTTTGCAGATTGCCGTTCGCACCCGAATCAAACTTT
TTTATCGCCCGGCAGGTTTAAAGGGTGATGTAAAAACCGCGCCAAATGAACTGCGATTTACGCGTAACGGTAATCAGCTC
CGCGTTGATAATCCGACAGTTTTTAATATTACCTTTAATCAATTTTTTGCGAATGACAAAGAAATTGAAAAAGCAGGCAT
GGTACCCGCTAAAGGGGCATTAAATATCACATTACCCGCCGGGGTAGGTAGCGTTTCTAAAATTAAATATAACACCATCA
ATGACTTTGGATCGTCAGCGGAAATGATCACTAAAAATGTTGATTGA

Protein sequence : 
MKSKFVALALSLFLSQSVLAGGVGLSSTRVIYDGSKKEASLTVQNKSKTEEFLIQSWVDDAAGSKKTPFIITPPLFKLDP
EKNNILRIVNITPGLPQDRESVYWVNVKAIPSKSDDSENKNVLQIAVRTRIKLFYRPAGLKGDVKTAPNELRFTRNGNQL
RVDNPTVFNITFNQFFANDKEIEKAGMVPAKGALNITLPAGVGSVSKIKYNTINDFGSSAEMITKNVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-42 44
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lpfB YP_003080339.1 fimbrial chaperone VFG0455 Protein 7e-77 71
lpfB YP_003080339.1 fimbrial chaperone VFG0911 Protein 9e-41 44
lpfB YP_003080339.1 fimbrial chaperone VFG1644 Protein 9e-41 44
lpfB YP_003080339.1 fimbrial chaperone VFG0875 Protein 2e-41 43
lpfB YP_003080339.1 fimbrial chaperone VFG0445 Protein 3e-44 42