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Name : yfcU (ECSP_3212) Accession : YP_003079067.1 Strain : Escherichia coli TW14359 Genome accession: NC_013008 Putative virulence/resistance : Virulence Product : fimbrial usher Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3175541 - 3178180 bp Length : 2640 bp Strand : - Note : - DNA sequence : ATGCCTGACCATTCTCTTTTCCGACTGCGGGTACTTCCCTGCTGCGTTGCATTGGCAATGTCCGGGAGTTATGTCAATGC CTGGGCTGAAAATGAAATTCAGTTTGATTCCCGTTTTCTGGAGTTAAAAGGCGACACAAAAATCGATCTGAAGCGATTTT CCAGCCAGGGTTATGTCGAACCTGGGAAATACAATTTACAGGTTCAACTAAATAAACAGCCGCTGACGGAAGAATACGAT ATTTACTGGTACGCCTCTGAGAACGATGCCAGTAAAACCTATGCCTGCCTGACGCCTGAACTGGTCGCGCAGTTTGGCTT AAAAGAGGATGTGGCAAAAAACCTGCAATGGATCCACGACGGCAAATGCCTGAAACCCGGTCAACTGGAAGGCATTGATA TTAAAGCTGACCTGAGTCAGTCAGCGTTAGTCATTTCATTACCCCAGGCTTACCTTGAATATACCGACATCAACTGGGAT CCGCCTTCACGCTGGGATGACGGTATATCTGGTTTAATTGCTGACTACAGTATTACCGCCCAGACACGACATGAAGAAAA TGGCGGGGATGACAGCAATGAAATTAGCGGTAACGGGACGGTTGGGGTGAACCTCGGCGCATGGCGTCTTCGTGCCGACT GGCAGACTGATTATTTGCATAGTAAAAGCAATGATGACGATGTTATCAACGGTGATGACACGCAAAAAAACTGGGAGTGG AGCCGCTACTACGCCTGGCGAGCCTTACCGTCGCTAAAAGCCAAACTTGGCCTTGGCGAAGACTACCTGAATTCTGATAT TTTCGACGGCTTTAACTACGTGGGTGGCAGTATCAGCACCGACGATCAAATGTTGCCGCCGAATCTGCGCGGCTATGCGC CGGATATCTCCGGCGTGGCGCACACCACCGCGAAAGTGACCGTCAGCCAGTTGGGCCGCGTCATCTACGAAACCCAGGTC CCGGCGGGGCCGTTCCGCATCCAGGATCTTGGCGATTCGGTCTCCGGTACGCTGCATATCCGCATTGAAGAACAGAACGG TCAGGTGCAGGAATATGACATCAACACCGCCTCGATGCCGTTCCTGACTCGCCCCGGCCAGGTGCGCTATAAACTGATGA TGGGCCGCCCGCAGGAGTGGGGGCACCACGTGGAAGGCGGTTTCTTCTCCGGCGGCGAAGCTTCCTGGGGGATTGCCAAC GGCTGGTCGCTATACGGCGGGGCGCTGGCAGATGAACACTATCAGTCGGCGGCGCTTGGCGTCGGTCGCGACCTGTCTGT GTTTGGTGCGGTGGCCTTTGATATCACCCACTCGCATACCCGTCTGGATAAAGAGACCGCCTACGGGAAAGGTTCACTGG ACGGCAACTCGTTTCGCCTGAGCTATTCCAAAGACTTCGATGAACTGAACAGCCGCGTCACTTTTGCCGGATACCGCTTC TCGGAAGAGAACTTCATGACCATGAGCGAGTATCTCGATGCCAGCGACAGCGAAATGGTGCGCACCGGCAACGACAAAGA GATGTACACCGCCACCTATAACCAGAACTTCAGGGATGCCGGTGTGTCTGTTTATCTCAACTACACCCGCCATACCTACT GGGATCGCGACGAACAGACCAACTACAACGTCATGCTCTCGCACTACTTCAACCTGGGCAGTATCCGCAACATGAGCATT TCCATGACCGGATACCGCTACGAGTATGACAACCAGGCCGATAAAGGTGTGTACATATCGCTCAGTATGCCGTGGGGTGA CAGCAGCACCATCAGCTATAACGGCAACTACGGCAGCGGTTCGGACAGCAGCCAGGTGGGGTATTTCAGCCGTGTCGATG ACGCAACCCATTACCAGTTGAACGTAGGCACCAGCGACAATCACTCCAGCGTTGACGGTTATTACAGCCACGACGGATCG CTGGCGCAGGTCGATCTCAGCGCTAACTACCATGAAGGGCAGTACACCTCGGCGGGTATTTCCTTACAGGGCGGCGCGAC GCTCACCGCACAAGGTGGCGCGCTCCACCGTACCCAGAATATGGGCGGTACGCGTCTGCTGATTGATGCCGACGGTGTGG CTGGTGTTCCGGTGGAAGGAAATGGCGCGGCGGTTTACACCAATATGTTCGGTAAGGCAGTGGTGGCAGACGTCAACAAC TACTACCGCAACCAGGCGTATATCGACCTAAACAACCTGCCGGAAAACGCCGAAGCCACCCAGTCCGTGGTGCAGGCCAC GCTTACCGAAGGGGCCATTGGCTACCGTAAGTTCTCGGTGATCAGCGGGCAAAAAGCGATGGCGGTGCTGCGTCTGCAAG ATGGCAGTTATCCGCCGTTTGGCGCGGAAGTGAAAAACGACAGCGCGCAGAACGTCGGTCTGGTTGACGATGACGGCAAC GTCTACCTCGCGGGCGTAAAACCTGGCGAGCATATGATCGTTTCATGGGGCGGTGTGGCCCACTGCGATATTCATCTGCC TGACCCGCTGCCAGCCGATCTGTTCAATGGCCTGTTATTACCATGCCAGCAAACAGGGGCGATATCTCCTTCGATGCCTC ATGAAATTAAGCCGGTGATCCAGGAGCAGACCCAGCAGGTGATGCCAACGGAAGCGCCAGTATCGGTATCAGCCAATTAA Protein sequence : MPDHSLFRLRVLPCCVALAMSGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEYD IYWYASENDASKTYACLTPELVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLSQSALVISLPQAYLEYTDINWD PPSRWDDGISGLIADYSITAQTRHEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEW SRYYAWRALPSLKAKLGLGEDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQV PAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIAN GWSLYGGALADEHYQSAALGVGRDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRF SEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMSI SMTGYRYEYDNQADKGVYISLSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQLNVGTSDNHSSVDGYYSHDGS LAQVDLSANYHEGQYTSAGISLQGGATLTAQGGALHRTQNMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNN YYRNQAYIDLNNLPENAEATQSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDGN VYLAGVKPGEHMIVSWGGVAHCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPVIQEQTQQVMPTEAPVSVSAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-153 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-152 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 5e-152 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-153 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-153 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-153 | 44 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 9e-159 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_003079067.1 | fimbrial usher | VFG1548 | Protein | 1e-153 | 44 |
| yfcU | YP_003079067.1 | fimbrial usher | VFG0884 | Protein | 7e-154 | 44 |
| yfcU | YP_003079067.1 | fimbrial usher | VFG0895 | Protein | 8e-154 | 44 |
