Gene Information

Name : ECSP_1565 (ECSP_1565)
Accession : YP_003077482.1
Strain : Escherichia coli TW14359
Genome accession: NC_013008
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1594624 - 1596162 bp
Length : 1539 bp
Strand : +
Note : -

DNA sequence :
ATGAACGACATCTCTTCTGACGACATCTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAACTCCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGAGAGCGATACGCTG
ACTGGTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCCCTGAATCACTACC
CCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTATCTGGGCGAGGATA
CCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCT
GACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGGCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTCATGACT
GACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACCGGGCGGTTGTG
GGCGTATGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTAT
CGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTCCGCATCCCGTC
AGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGC
AGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGTTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACC
CTGTTGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCACTGACGTACTATGCGAACGA
TGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGCCCTGCGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCT
TCGGCTCTGATCATGGTGGTGAGCGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGTGGATCCA
GAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGGTCAGCGAACTGCTTCCGTGGCGCAT
AGCACTGCCAGCTGAATAA

Protein sequence :
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTL
TGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFSGVLQADAYAGFNELY
RNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKT
LLRHSELAKAFAYALNQWPALTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDP
ESYLRHVLGVIADWPVNRVSELLPWRIALPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 99
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 99
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 99
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 99
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 99
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 99
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 99
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 99
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 99
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 99
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 98
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-164 92
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 87
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-151 64
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 3e-155 64
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 3e-155 64
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 7e-106 62
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 1e-140 60
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-101 59
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 7e-129 55
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 2e-117 54
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-117 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSP_1565 YP_003077482.1 transposase VFG0793 Protein 0.0 99
ECSP_1565 YP_003077482.1 transposase VFG1700 Protein 2e-164 92
ECSP_1565 YP_003077482.1 transposase VFG1051 Protein 0.0 87
ECSP_1565 YP_003077482.1 transposase VFG1513 Protein 4e-106 62
ECSP_1565 YP_003077482.1 transposase VFG1736 Protein 2e-123 62