Gene Information

Name : ycbR (ECSP_1044)
Accession : YP_003076976.1
Strain : Escherichia coli TW14359
Genome accession: NC_013008
Putative virulence/resistance : Virulence
Product : periplasmic pilin chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1132911 - 1133612 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGTTCGTCCACATGGGCGGC
AGGTAAAGGCGGGGTTGGACTTGCAGCAACACGTCTTGTTTATTCGGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTA
ACACCAGTCCGGATGTTCCTTATCTGATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCGGACTTTATTATT
ACACCACCGCTATTTGTGCTGAATCCGGCAAACGAGAATCTGTTACGCATTATGTACATTGGCGCGCCGTTGGCGAAAGA
CAGAGAAACTCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAAGGCAATACCCTGAAGATTG
CCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGTTTAGCGTATCCCTTAGGCGAGGCTCCGGCGAAACTGCGT
TGCACTTCGTCAGCTGACATGGTTACGGTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGG
AAAGTTAGTTAAAAATCAAATGATTTCCCCCTTTGATAAATACCAATTCTCTCTGCCAAAGGGTGCCAAAAATAGCAGCG
TAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Protein sequence : 
MKTCITKGIVTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-38 45
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-37 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycbR YP_003076976.1 periplasmic pilin chaperone VFG0911 Protein 2e-37 45
ycbR YP_003076976.1 periplasmic pilin chaperone VFG1644 Protein 3e-37 45
ycbR YP_003076976.1 periplasmic pilin chaperone VFG0875 Protein 2e-38 45
ycbR YP_003076976.1 periplasmic pilin chaperone VFG0445 Protein 1e-37 42