Gene Information

Name : kdsB (TERTU_2463)
Accession : YP_003073892.1
Strain : Teredinibacter turnerae T7901
Genome accession: NC_012997
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 2737720 - 2738496 bp
Length : 777 bp
Strand : -
Note : identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466

DNA sequence :
ATGTCTTTCTCTGTAGTTATTCCTGCGCGTTACGCATCCCAGCGACTTCCAGGTAAGCCGCTGCAATTGATCAGTGGCAA
GCCGATGATTGAGCATGTTTACAACTGTGCGCAGCGCAGTGCAGCATCTCGTGTGGTTGTTGCTACCGACGATCAACGCG
TCTTTGATGCGGTGACTGGGTTTGGTGGCGATGTACTGATGACCTCTGCGGAACACCCGTCGGGCACAGACCGGCTACAG
GAAGTCGTAAGCCAGCTAAAGCTTGGCGATGACGAAATCATAGTGAATGTGCAAGGGGACGAGCCATTAATTCCGGCGGA
AGTGATAAATCAGGTCGCGCGCAATTTACAGTCCAATTCAGCGGCCAGTGCTGCGACCCTGTGCGAACCGATTACAGCTT
TCGAAGACGTGATAAACCCCAATGTTGTGAAAGTGGTTTGCGATGATCAAAACTTCGCCCATTACTTTTCACGTGCCCCC
ATTCCCTGGGATAGAGATGTCTACGCTAAATTTGGCACGCATTCTGCCAATCAAATATCAACAGCTCATTCGGCAACCCG
GCGCCACATTGGTATCTACGCCTACCGCGTGGCGCTCTTGCATCAGTTCGTACTCTGGCCGAGTGGTGTTTTGGAAAATA
TCGAGAAACTGGAGCAATTACGCATAATTGCTAATGGTCTCAAAATTCACGTCCAGGACGCTTGTGCTGAGGTGCCCGGA
GGTGTCGACACCCCAGAAGATTTATCGCGAGTCAGAGTACGCTTTGGAGACATTTGA

Protein sequence :
MSFSVVIPARYASQRLPGKPLQLISGKPMIEHVYNCAQRSAASRVVVATDDQRVFDAVTGFGGDVLMTSAEHPSGTDRLQ
EVVSQLKLGDDEIIVNVQGDEPLIPAEVINQVARNLQSNSAASAATLCEPITAFEDVINPNVVKVVCDDQNFAHYFSRAP
IPWDRDVYAKFGTHSANQISTAHSATRRHIGIYAYRVALLHQFVLWPSGVLENIEKLEQLRIIANGLKIHVQDACAEVPG
GVDTPEDLSRVRVRFGDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 5e-39 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 4e-39 44
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 1e-38 43