Gene Information

Name : lolD (TERTU_1756)
Accession : YP_003073272.1
Strain : Teredinibacter turnerae T7901
Genome accession: NC_012997
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1822669 - 1823355 bp
Length : 687 bp
Strand : +
Note : identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211

DNA sequence : 
ATGACGAAAATTGTTCTGCGTTGCGAAGACGTTAAAAAAACTTATAGCCAGGGGCCGCAAAAAGTCGAGGTGCTAAAGGG
AATAGAGCTGGATATCCACGAAGGTCAACAGATCGCCATTGTGGGCGCGTCCGGCAGCGGAAAGAGCACCTTATTAAACG
TGCTGGGTGGTCTGGACCAGCCCGACACTGGAGTAGTGGAAATTCTACAGCGCGCTTTTTCCCAGTGTTCCGACAATGAG
CGCGGCAAGATTCGCAATCAGTCTCTTGGTTTTGTTTACCAGTTTCATCATTTATTGCCTGAGTTTAGCGCATTGGAAAA
CGTTGCAATGCCACTGCTCATCGCAGGTCAAAAAATGGCAGACGCATCAAAAATTGCGGCGCAGATCTTACATCGTGTTG
GTTTAACCGACCGTGCCGTTCACAAGCCAGCGGAATTATCTGGCGGTGAACGTCAGCGGGTCGCTATTGCTCGTGCTCTG
GTAAATAATCCAGCCTGCGTACTCATGGATGAGCCAACGGGTAATCTGGATTCCGCAAATGCCGCCTCTATTCAAGCTCT
GATGGCAGAGCTGAGCCAATCGTTGTCAACAGCATTTATTGTTGTGACTCACGACCTGGCGCTTGCAAAAACAATGCATC
AGGTGTACGAGTTGGGTGAGGGTAGATTGGTTCGGGTTCATGGTTAA

Protein sequence : 
MTKIVLRCEDVKKTYSQGPQKVEVLKGIELDIHEGQQIAIVGASGSGKSTLLNVLGGLDQPDTGVVEILQRAFSQCSDNE
RGKIRNQSLGFVYQFHHLLPEFSALENVAMPLLIAGQKMADASKIAAQILHRVGLTDRAVHKPAELSGGERQRVAIARAL
VNNPACVLMDEPTGNLDSANAASIQALMAELSQSLSTAFIVVTHDLALAKTMHQVYELGEGRLVRVHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_003073272.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 6e-38 46
lolD YP_003073272.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 6e-32 42