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Name : lysS (TERTU_1172) Accession : YP_003072750.1 Strain : Teredinibacter turnerae T7901 Genome accession: NC_012997 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1227082 - 1228578 bp Length : 1497 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAGCGAACAAAATCAAGCAGCCGACGCGCAGCAGGATGAAAACAAGCTAATTGCAGAGCGGCGTGCAAAGCTCGCTGA GCTGCGCGCTGTCGGCAACCCATTTCCCAACGATTTCAGACCGACTCATCACGCGGACGCTTTGCAACAGGCGCACGGCA GTAAAGAGAAAGCGGCGTTAGAAGAGGCTGCGATGGTTGTCTCGGTTGCCGGTCGTGTCATCCGCAATCGTGGTGCTTTT ATGGTGTTGCAGGATGGCAGTGGCCAGATTCAGTTGTACGTGACCAAAGAGGCGCGGGGCTTCGCTAAATCGCTGGATCT CGGCGACATTATCGGTGTGTCCGGTGTCCTGCATAAGTCGGGTAAAGGCGACCTTTATGTAAACTTGGATGAATACAAGC TGCTGACCAAAGCCCTGCGTCCTCTGCCAGATAAATACCATGGCCTGGCAGACCAGGAGTTGCGTTATCGTCAGCGGTAT GTGGATCTGATCGCCAACCCGGAAGTGCGCAAAACGTTTTTGCTCCGCTCACGGATTGTGCAGTTTATTCGAGACTACCT GAATGGGCGTGAATTTCTCGAAGTGGAAACACCGATGCTGCAGGCAATTCCCGGCGGTGCGACGGCGCGTCCGTTTGAAA CCCACCACAACGCGCTGGATATCGATATGTATTTACGTATTGCCCCAGAGCTCTATTTGAAGCGCCTTGTGGTCGGTGGT TTCGAGCGTGTGTACGAAATAAATCGTAATTTCCGTAACGAGGGCTTGAGTACCCGTCACAATCCGGAATTTACCATGCT CGAGTTTTACCAGGCTTACGCAGATTACAACGACCTGATGGATCTGACTGAAGATATGCTGCGCAACTTGGCTCAAACTG TTCTGGGTAGCACCGAAGTCACTGCGACACTCGGTGAGGACGAGAGCGTGACTTATGATTTCGCAAAGCCGTTTGTTCGA CTGAGCGTCTTCGATTCCATATTGCACTTTAATCCCGATCTTAAGGCAGAGGATATCGACAGCCCGGAGTCTGCTCGCGC TGTCGCGAAGAACCTCGGTATTCCGATGAAAGACAATTGGGGGCTGGGTAAAGTCCAAATCGAGATTTTCGAGAAGACCG TTGAGCACCGCTTGATTCAGCCTACCTTTATTACCGAATACCCCACCGAGGTATCGCCGCTCGCCCGTCGCAATGACGAT AACCCGTTCGTCACAGACCGGTTTGAATTTTTTGTGGGTGGCCGAGAAATTGCCAACGGTTTCTCCGAGCTGAATGATGC GGAAGACCAGGCTGACCGCTTTAAACAGCAAGTTGCCGAAAAAAATGCGGGTGACGATGAAGCCATGCATTACGATGCAG ATTACGTTCGCGCGCTGGAGTATGGGTTACCGCCCACTGCAGGAGAGGGCATCGGCATTGATCGCCTGGTGATGTTGCTG ACGGATTCTGCATCCATTCGCGATGTACTTCTGTTTCCTCATATGCGTCCGGAATAA Protein sequence : MSEQNQAADAQQDENKLIAERRAKLAELRAVGNPFPNDFRPTHHADALQQAHGSKEKAALEEAAMVVSVAGRVIRNRGAF MVLQDGSGQIQLYVTKEARGFAKSLDLGDIIGVSGVLHKSGKGDLYVNLDEYKLLTKALRPLPDKYHGLADQELRYRQRY VDLIANPEVRKTFLLRSRIVQFIRDYLNGREFLEVETPMLQAIPGGATARPFETHHNALDIDMYLRIAPELYLKRLVVGG FERVYEINRNFRNEGLSTRHNPEFTMLEFYQAYADYNDLMDLTEDMLRNLAQTVLGSTEVTATLGEDESVTYDFAKPFVR LSVFDSILHFNPDLKAEDIDSPESARAVAKNLGIPMKDNWGLGKVQIEIFEKTVEHRLIQPTFITEYPTEVSPLARRNDD NPFVTDRFEFFVGGREIANGFSELNDAEDQADRFKQQVAEKNAGDDEAMHYDADYVRALEYGLPPTAGEGIGIDRLVMLL TDSASIRDVLLFPHMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-134 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003072750.1 | lysine--tRNA ligase | VFG1668 | Protein | 1e-134 | 60 |
