Gene Information

Name : fliP (METDI0606)
Accession : YP_003066310.1
Strain : Methylobacterium extorquens DM4
Genome accession: NC_012988
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 573136 - 573918 bp
Length : 783 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type s : structure

DNA sequence : 
GTGAAGAGAGCGCGCGCGATCCTCGTCACCGCCGGCCTTGCCGTGGCGGCCGGCCTCACCGCCTCGGCCGCGCTGGCGCA
GGGAGCCGCGCCCGGCGGCGTCACCGGCGTGCCCGGTCTCGACGCACTGCTTCCGCCCGGCAACGGGGCGGCCTCCGGGC
GCATCATCCAGCTCGTCGCGCTGCTCACCGTGCTGTCGCTGGCGCCGGGCCTGCTCGTGATGGTGACGAGCTTCACGCGC
TTTGCCGTTGCGCTCTCGTTCCTGCGCTCGGGGCTTGGCCTTCAGAGCACGCCGGCCAACCTGTTCCTCGTCTCGCTCGC
CCTGTTCATGACCTTCTACGTCATGGCACCGACCTTCGACCGCGCCTGGAACGAGGGCGTGAAGCCGCTGCAGGAGAACC
GCATCAGTGAGGAGGAAGCCTTCGGCAAGATCGTCGATCCATTCCGCGAGTTCATGACCCAGCACGTGCGCCCGAAGGAC
CTTCAGACCTTCACGGACCTGGCGAGCCGCACCTTCCCCAAAGCCGAGGCCGGCGAGAAGATCGACCTGCGCATCCTGAT
CCCCGCCTTCATGATCTCCGAGCTGCGCCGGGGCTTCGAAATCGGCTTCCTGATCGTGCTGCCCTTCCTCGTCATCGACA
TCATCGTCTCCACCATCGTGATGTCGATGGGCATGATGATGCTGCCGCCGACGGTGATCTCGCTGCCGTTCAAGGTGCTG
TTCTTTATCCTGATCGACGGCTGGAACCTGTTGGTGAGCGGCTTGGTGCGGTCGTTCTTCTGA

Protein sequence : 
MKRARAILVTAGLAVAAGLTASAALAQGAAPGGVTGVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTR
FAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD
LQTFTDLASRTFPKAEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVL
FFILIDGWNLLVSGLVRSFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-33 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-33 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-33 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-30 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-30 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-30 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-32 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-46 47
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG0394 Protein 4e-34 46
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG2338 Protein 9e-46 45
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-46 44
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-44 43
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG0519 Protein 3e-33 42
fliP YP_003066310.1 flagellar biosynthesis protein FliP VFG0188 Protein 7e-32 42