Gene Information

Name : phoB (METDI5771)
Accession : YP_003071176.1
Strain : Methylobacterium extorquens DM4
Genome accession: NC_012988
Putative virulence/resistance : Virulence
Product : phosphate regulon transcriptional regulatory protein PhoB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5756831 - 5757535 bp
Length : 705 bp
Strand : +
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 90133909, 91100346; Product type r : regulator

DNA sequence : 
ATGACGAGTGCGCACATCCTGATCGTCGAGGACGAGGAATCGCTGACGACCCTGCTGCGCTACAATCTCGAAGCGGAGGG
TTTCCAAGTCGATGTCGCGGTTCGCGGCGACGAGGCCGACCTTCGCCTGCACGAGACCACGCCCGACCTCGTACTCCTCG
ACTGGATGGTGCCGGGGCTCTCGGGGATCGAGCTGTGCCGGCGCATCCGTGCCCGCCGTGAGACCGAACGCCTGCCGGTC
ATCATGCTGACCGCCCGGGGCGAAGAGACCGACCGTGTGCGCGGCCTCTCGACCGGCGCCGACGACTACGTCGTCAAGCC
GTTCTCCGTGCCGGAGCTGCTCGCCCGCGTCCGTGCGCTCCTGCGCCGCGCCAAGCCCACCCACGTTTCCGACATGCTCG
TGGCAGGCGATATCGAGCTCGACCGCGTCAGCCATCGCATCCGCCGGCAGGGCCGCGAGATCCATCTCGGGCCGACCGAG
TTCAAGCTGCTCGAATACCTGATGCAGAGCCCCGGCCGGGTCTTCTCGCGGGAGCAGTTGCTCGACGGCGTGTGGGGCCA
CGACGTCTACATCGACGAGCGCACGGTCGATGTTCATGTCGGCCGCCTGCGCAAGGCGATCAACCGCCCGCGCCAGAGCG
ACCCGATCCGCACCGTGCGCGGCTCCGGCTACTCGTTCGACGAGATGTTCGCCGGAGCGGAGTGA

Protein sequence : 
MTSAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIELCRRIRARRETERLPV
IMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRAKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTE
FKLLEYLMQSPGRVFSREQLLDGVWGHDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDEMFAGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-27 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB CP001485.1.gene721.p Protein 5e-23 44
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB NC_012469.1.7686381. Protein 7e-29 42
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB NC_012469.1.7685629. Protein 1e-26 42
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB AE000516.2.gene3505. Protein 3e-33 42
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB HE999704.1.gene2815. Protein 2e-29 41
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB NC_010400.5986590.p0 Protein 4e-27 41
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB NC_011595.7057856.p0 Protein 9e-28 41
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB HE999704.1.gene1528. Protein 6e-24 41
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB NC_010410.6002989.p0 Protein 9e-28 41
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB BAC0125 Protein 1e-22 41
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB CP000647.1.gene2531. Protein 5e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB VFG1563 Protein 3e-27 43
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB VFG1702 Protein 2e-27 43
phoB YP_003071176.1 phosphate regulon transcriptional regulatory protein PhoB VFG1390 Protein 2e-25 42