Gene Information

Name : METDI5107 (METDI5107)
Accession : YP_003070534.1
Strain : Methylobacterium extorquens DM4
Genome accession: NC_012988
Putative virulence/resistance : Virulence
Product : phoP: DNA-binding response regulator in two-component regulatory system with PhoQ
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5024519 - 5025184 bp
Length : 666 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of amino acid motif, structural feature or limited homology; Product type pr : regulator

DNA sequence : 
ATGCGCATCCTCGTCGTAGAAGACGAGCCGCGCATCGCGGCCGATATCAGCGAGGGTCTGGAGCGGGCCGGCTACGTCGC
CGAGATCGTCGGCGACGGCGAGGCGGCGTGGTTCCAGGCCGAGACCGAGACCTACGACGCCATGGTGCTCGACCTCGGCC
TGCCGCGCCTCGACGGGCTGGGCGTGCTGCGCCGCCTGCGCGGGGCCGACGTCGCCCTGCCGGTGCTGATCCTCACCGCC
CGTGACGGCTGGCGCGAGCGGGTCGAGGGGATCGACGCGGGCGCCGACGACTACCTCGTCAAGCCGTTCCGGATGGAGGA
GCTGGTGGCGCGGCTGCGCGCCATCCTGCGCCGCACCGCCGGCCACGCCTCCCCCGTCCTGCGGGCCGGCGCGGTCGAAC
TCGACACCCGCACCCGCGCGGTCTCGGTGGCGGGCCGCGAGACCGACCTCACCGCGCTCGAATACCGCCTGCTCGCCTTC
CTGCTCCACCGCCAGGGGCAGGTCGTGGCGGCGGGCGAGTTGCTCGATCACCTCCACGGCAGCGACAGCGACCGCGAGGC
CAACGCGCTGGAGGCCCTGCTGACCCGGCTGCGGCGCAAGCTCGGCCCCGGCATCATCGAGACCCGCCGCGGCCACGGCT
ACCTCGTGCCGTCCGATCCGCCGTGA

Protein sequence : 
MRILVVEDEPRIAADISEGLERAGYVAEIVGDGEAAWFQAETETYDAMVLDLGLPRLDGLGVLRRLRGADVALPVLILTA
RDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAF
LLHRQGQVVAAGELLDHLHGSDSDREANALEALLTRLRRKLGPGIIETRRGHGYLVPSDPP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-23 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
METDI5107 YP_003070534.1 phoP: DNA-binding response regulator in two-component regulatory system with PhoQ BAC0197 Protein 9e-27 45
METDI5107 YP_003070534.1 phoP: DNA-binding response regulator in two-component regulatory system with PhoQ NC_002516.2.879194.p Protein 4e-33 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
METDI5107 YP_003070534.1 phoP: DNA-binding response regulator in two-component regulatory system with PhoQ VFG1390 Protein 2e-23 43
METDI5107 YP_003070534.1 phoP: DNA-binding response regulator in two-component regulatory system with PhoQ VFG0473 Protein 4e-24 41