Gene Information

Name : CLIBASIA_03650 (CLIBASIA_03650)
Accession : YP_003065248.2
Strain : Candidatus Liberibacter asiaticus psy62
Genome accession: NC_012985
Putative virulence/resistance : Virulence
Product : polysialic acid capsule expression protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0794
EC number : -
Position : 803890 - 804915 bp
Length : 1026 bp
Strand : +
Note : COG0794 Predicted sugar phosphate isomerase involved in capsule formation

DNA sequence :
TTGCATTTTTATTTTTCGCATTTTAAATCTGTTACAAGAAAAGGTCATAGCCTTATGAAGAATTCAACTGTTCAATGTGC
TCTTCGAAGCATTATAGCAGAAAAGAGAGGGTTAAGTTCTTTAGAATCATCTTTGCAAGGGGAATTATCTTTTCAATTCC
ATTGTGCTGTAGAAAAAATCAAAGCTATTAAAGGTCGTGTTGTTATTACTGGAATTGGTAAGAGTGGTCATATTGGTTCA
AAATTAGCTTCTACATTGGCTTCTACAGGAACTCCTTCATTTTTTGTGCATGCTGCCGAAGCGAGTCATGGTGATCTTGG
TATGATCACGCGAGATGATTTGATTATTGTTCTATCGTGGAGTGGGAGTAGTGATGAATTAAAGGCTATTTTATATTATG
CACGTCGATTTTCTATTCCATTAATTGCTATCACATCGGAAAATAAATCAGTTGTGGCATGTCATGCAGATATTGTTCTA
ACATTGCCGAAAGAACCTGAATCATGTCCACATGGTTTGGCTCCGACAACTTCTGCTATTATGCAATTGGCAATAGGAGA
TGCGTTGGCAATAGCGCTTCTGGAATCGCGAAATTTTTCAGAAAATGATTTTTATGTTTTGCATCCAGGTGGAAAATTAG
GCACGTTGTTTGTTTGTGCGTCCGATGTCATGCATTCAGGGGATAGTATTCCTCTTGTGAAGATTGGTTGCCCATTAATA
GATGCTATTACTATTCTTTCAGAGAAAAGATTTGGTTGTGTTGCAGTCGTTGATGAAGGTCAAAAGTTGAAGGGTATTAT
AACTGAAGGAGACATATTCAGAAACTTTCACAAAGATTTAAATACACTCAGTGTTGAAGATGTTATGATAAAAAATCCTA
AGGTTATTTTGGAGGATACTCTTCTAACGGTTGCTATGCAACTTTTACGGCAACACAATATTTCTGTTCTTATGGTTGTG
GATGATTGTCAAAAAGCAATAGGTATCGTTCATTTTTTAGATCTGTTGAGATTTGGCATAATATAA

Protein sequence :
MHFYFSHFKSVTRKGHSLMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGS
KLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVL
TLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLI
DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVV
DDCQKAIGIVHFLDLLRFGII

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsF CAE85210.1 KpsF protein Virulence PAI V 536 Protein 4e-40 42
kpsF AAZ04466.1 polysialic capsule transport protein Virulence PAI I APEC-O1 Protein 5e-40 42
kpsF YP_854329.1 polysialic acid capsule synthesis protein KpsF Not tested PAI I APEC-O1 Protein 1e-39 42