Gene Information

Name : CLIBASIA_02120 (CLIBASIA_02120)
Accession : YP_003064950.1
Strain : Candidatus Liberibacter asiaticus psy62
Genome accession: NC_012985
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 742844 - 743728 bp
Length : 885 bp
Strand : -
Note : COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
ATGTTACGTTATTTTATATGTTTGTTGTTCTCATATATTCCCATGTCGGCATCTGCTACGACACAAAAAAAAGTAGTATT
ATCCAGTTTTTCTATTATCGGAGACATAACACAAAATATTGCTAAAGATTTGGTAACAGTAACCACTTTAGTAGAAGCGG
GCAATGATTCTCATAGTTATCAAGTTACATCTGCAGATGCAATTAAAATACAAAATGCAGATCTGATTCTATGCAATGGC
TTGCATCTTGAAGAAACTTATATGAAGTATTTCACTAATTTAAAAAAAGGAACTAAAATCATTACCGTCACCGACGGAAT
CAATCCTATTGGCGTGTCGGAAGATACCAGTGTAGACAGTGAACCTAATCCCCACGCTTGGATGTCCCTTACCAATGCAA
TGATATACATCGAAAACATTAGAAAAGCATTGACAGCATTAGATCCAAGTAATGCTAAAAAATATGAACTCAATGCACGA
GAGTACTCAGAAAAAATACGAAATTCGATATTGCCCTTAAAAACTAGAATTGAAAAAGTGGACCCTGAAAAACGTTGGTT
TGTTACTAGCGAAGGGTGTTTGGTATACTTAGCGGAAGATTTTGGTTTCAAATCACTATATCTCTGGCCAATTAATTCCG
ATTCTGAAAGGAGTCCTTCTATGATGCGTCATGCGATCAATCAGATGCGCTCCCATAAAATAAAATTTATATTTTCTGAA
AGTACAAATTCTGATCAACCAGCCAAACAAGTTGCCTATGAAACAAATGCATCCTATGGTGGGGTTTTATACGTAGATAG
CCTCAGTAAACCAGATGGTCCTGCTCCCACTTATTTAGACTTACTTAGATTCTCTCTAACGAAAATTGTGGATACTTTAT
TTTGA

Protein sequence : 
MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNG
LHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAR
EYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE
STNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-61 48
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-61 45
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-61 45
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-61 45
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-61 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLIBASIA_02120 YP_003064950.1 periplasmic solute binding protein BAC0439 Protein 1e-62 49
CLIBASIA_02120 YP_003064950.1 periplasmic solute binding protein BAC0349 Protein 2e-61 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLIBASIA_02120 YP_003064950.1 periplasmic solute binding protein VFG0525 Protein 2e-61 45