Gene Information

Name : CLIBASIA_02130 (CLIBASIA_02130)
Accession : YP_003064952.1
Strain : Candidatus Liberibacter asiaticus psy62
Genome accession: NC_012985
Putative virulence/resistance : Virulence
Product : ABC transporter membrane spanning protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 741176 - 741997 bp
Length : 822 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGATAAATCAAATTTTAGAACCTTTTACATACAATTACATGAATACAGCTATTTGGATGAGTACTCTGATAGGATGTGT
TTGTGGTTTGCTGTCAGCATATTTAATTTTGAAAGGTTGGTCTTCCATTGGGAATGGAATTTCGCATGCGATTTTTCCTG
GGATAGTTGTCTGCCATCGATTGAATATCCCTTTATCCGTTGGCGCTACTATTTCGGGAATGTTAGCGACCGGTATAATG
GTGAAAATTAAAGAGACAACAAAGCTACGAGAAGACGTTGCTATTGCCGTGGTCTATATAATTTTCTATTCTTTTGCTAT
GTTTATGTTGTCACTATCACCATCTGCTGTTTATGTAGAAAATATTTTTTTAGGAAATACTCTTTCTATGAGTAGATCTG
ATACGATTCAAGTTTTGATTATAACTTTTAGCGTTGCATGCATTGTATACATGAAATGGAAAGATTTTGTACTTTTATTT
TTTGATGAAAGACATGCCCATTCGGTAGGAATAAATGTAAAATTATTGAAAATGTTATTTTTTAGCTTATTAACCATAAC
GATAGTGATTGGCTTCCAGACAGTGGGCATATTACTTGTCATTGCAACCGTCATCACGCCTGGTGCTACAGCTAAGTTAA
TGAGCAAATCTTTTGGGACATATCTTGTTTCAAGCTCTCTCCTTGGTGCTACTAGTAGCTTTCTAGGATCATATATTAGT
TATTTCCTAGACTGTAGCCCTGGAGGAATAATTGTAATCATAGAAACCAGTTTGTTTTTACTATGTCTTTTCTTTTTCTC
TAAACAATACAGAACCTCATAA

Protein sequence : 
MINQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIM
VKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLF
FDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYIS
YFLDCSPGGIIVIIETSLFLLCLFFFSKQYRTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-54 45
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-54 45
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-54 45
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-54 45
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-54 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLIBASIA_02130 YP_003064952.1 ABC transporter membrane spanning protein BAC0351 Protein 2e-54 45
CLIBASIA_02130 YP_003064952.1 ABC transporter membrane spanning protein BAC0441 Protein 1e-50 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLIBASIA_02130 YP_003064952.1 ABC transporter membrane spanning protein VFG0527 Protein 2e-54 45