Gene Information

Name : CLIBASIA_02135 (CLIBASIA_02135)
Accession : YP_003064953.1
Strain : Candidatus Liberibacter asiaticus psy62
Genome accession: NC_012985
Putative virulence/resistance : Virulence
Product : ABC transporter membrane spanning protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 740290 - 741123 bp
Length : 834 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGAGTAGTTTCCTACATTATGTTCTGTTGCCTTTGACATTTCCTGCTATCCAAAATAGTTTTATTATCACTGTTATAGT
GGTGATTCCCATGTCCGTTCTATCTTGTTTTATAATTTTAAAAAATCAATCTTTTGCAGGAGAAGCGATTTCACATTCAG
TTCTCCCTGGGATTGTTTTATCTCATATGGCAGGAATCCCATTAGAAATTGGAGCTTTTATCGCAGGGATGATCTGTACA
TTATCTGCTGGGTACCTTAAAGAGAAGAGCTATTTTCAAGAAGACCTCGTCTTGAGCATTGTATTTTCTGGCATGTTTGC
TATTGGAATAATTCTGATATTGAAAGTTCATAGCTCTCTTCATTTTAGCCACATATTATTAGGAGATATGTTGGGAATAT
CTAAATCAGATATTATAACAACGGCTTTTTTCGCGTTTATTTCTATATCTTTTCTCATTCTCAAAAAGAATGATCTTCTT
CTCATGATATTTGATCCTATGCACGCTCATTCCATGCAAATTCCCATAAAATTATTGCATTATAATTTTTTAATTGTACT
ATCCCTTATTATTGTGATTTCCTTAAAATCAATAGGAATCATTCTTCCTCCAGCGGTGCTAGTACTTCCTGGAGCGACTG
CTTTTCTTTTATCTAAACATCATACGACGATGATATTACTTTCGGTTATCATTTCTGTGGTATGTACTCTCGTAGGTATA
TATATAAGTTTCTTCATCAATAGTGCAGCAGCACCCACAGTTGTCATTCTCATGGCTATTTTCTTTGTAGTAGTCTATGC
ATATTCAATAATTATCAATAAAAGAACTGCCTAG

Protein sequence : 
MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAFIAGMICT
LSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLL
LMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI
YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-46 44
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-45 44
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-45 44
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-46 44
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-46 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLIBASIA_02135 YP_003064953.1 ABC transporter membrane spanning protein BAC0352 Protein 9e-46 44
CLIBASIA_02135 YP_003064953.1 ABC transporter membrane spanning protein BAC0442 Protein 8e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLIBASIA_02135 YP_003064953.1 ABC transporter membrane spanning protein VFG0528 Protein 8e-46 44