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Name : clpC (JDM1_0840) Accession : YP_003062424.1 Strain : Lactobacillus plantarum JDM1 Genome accession: NC_012984 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 900444 - 902948 bp Length : 2505 bp Strand : + Note : - DNA sequence : ATGGATAACTTATTTACACCTAGTGCCAAAAGTGTGCTGGTACTGGCACAGGAACAGGCCAAATATTTCAAGCATCAGGC AGTTGGTACGGAGCATTTGCTATTAGCATTGGCCATCGAAAAGAATGGAATTGCTAATAAGGTGCTACAAAAATATGCCG TTAGTGAAGATGACATTCGTGAAGAAATCGAACGGTTCACTGGCTATGGGACGTTGAGCAATGTTGGCAAGGATACTTAC TTGCCATATTCACCAAAGGCCAAAGAAATTTTGTCCGTTGCCGGTGATGAAGCAAAACGGCTCGGTGCCAACAAGATTGG AACGGAACATTTGTTGTTAGCGATGCTCTCTGATGAAAGTATCCTTTCCTCGCGAATTTTAATGAATTTAAACTTAGATC TAGGTCAGACGCGTAAAGTCGTTCTTCGCAAGCTAGGTGTCAGTGACGCCATGAGTAAGCGCAAGGGTAACGCGGCTAAT CGCGGTGGCAAGAAGACTGAAGGAACGCCAACCTTGGATTCTCTGGCGCGCGATTTGACCCAATTAGCTAGTGAACAAGA AATGGACCCGGTAGTAGGTCGTTCCAAGGAAGTCAAACGGGTCATTCAGATCCTGTCACGGCGGACGAAGAATAATCCGG TCTTGATTGGTGAACCTGGGGTTGGGAAGACTGCAATCGCCGAAGGTCTAGCCCAAAAGATCGTGGCCGGTGATGTGCCA ACTGATATGGCAGATAAGCGCTTGATGATGCTCGATATGGGATCATTAGTCGCTGGGACAAAGTATCGTGGTGAATTCGA AGACCGCCTGAAAAAAGTGATTGATGAAATTTACAACGATGGCCATGTGATCTTATTTATCGATGAATTGCATACCTTGA TTGGTGCCGGTGGTGCTGAAGGGGCTATTGATGCCTCTAATATTCTGAAACCCGCACTTGCACGAGGGGAACTCCAAACG ATTGGGGCAACCACTTTAAATGAGTATCAAAAGTACATTGAATCTGACGCTGCGTTGGAACGGCGTTTTGCAACGGTCAT GGTCAATGAACCGACCGAAGACGAAGCCGTTGAAATCTTAGATGGACTACGGCCACGCTATGAAGAACATCATCGGGTTA CGATTACGGATGAAGCTGTTGATCAAGCAGTCAAGCTATCCAGCCGGTATATCAGTGATCGTTTCTTGCCTGATAAGGCC ATTGACTTGATGGATGAGGCGGCAGCTAAAGTCCGCATCGATCAGATGGATCAACCAACGAAGCTATCCAAGAACCAGGA CAAGTTAGCGCAACTGCGTGAGGATAAGGAAACAGCGATCGAAGCACAAGATTTTGAACAGGCCGCTGATATTCGTAAGC AGGAGATGCAACTGAAGCAACGCCTAGATCGAATCGAAGCTGACCAAGACGCCGAAGTGACTGAGGGGGCAACACCACAC TATGATTTACAAGTCACAGGTGAGGATATTGCTCAGGTCGTTGCCGAATGGACCGGGGTTCCGTTAACGCAATTGCAAAA ATCTGAAAGTGAACGCTTAGTTAACTTGGAAAAGATTTTGCATGAACGGGTTGTTGGACAGCCAGAAGCCGTATCCGCAG TGGCTCGTGCTATTCGCCGTGCGCGCAGCGGGTTGAAAGATCCGAGTCGGCCAATTGGTTCCTTTATGTTCTTAGGACCA ACTGGGGTTGGTAAGACGGAGCTAGCAAAAGCCTTGGCTGCAGCGATGTTCGGGTCTGAAGATAATATGATTCGGATCGA CATGTCTGAATACATGGAACGCTATTCGACTAGTCGTTTGATTGGCTCGGCACCTGGTTACGTTGGTTATGACGAGGGCG GTCAGCTGACAGAGAAGGTTCGCCAGAAACCATACTCGGTCGTGCTATTTGATGAAGTTGAAAAAGCTCATCCGGACGTC TTTAACATTTTGTTACAAATTTTGGATGACGGCTACTTGACGGATTCTAAGGGTCGGAAGGTAGACTTCAGAAATACGAT TCTGATTATGACGTCGAACCTTGGGGCAACCACACTTCGTGATGAAAAATCAGTTGGTTTTGGTGCAACTGATAAGGCCA ATGACTACAATGCGGTTGCTGCGACGATTCGAGCAACGTTAAAACAGACGTTCCGCCCAGAATTCTTAAACCGGATCGAC GAAACAATCGTCTTCCATTCATTGAATAAGGAAGAATTACACGAAATCGTTAAGTTGATGTCACAAGAAATTGTTGATCG AGTGGCCCAACAAGGTATCAAGATCAAAATCACTCCGGCTGCCATTGACGTGGTTGCGAAGGCTGGCTTTGACCCTGAGT ACGGAGCACGACCAATTCGACGGGCATTACAGACTGAAATCGAAGATCGGTTGAGTGAAGAATTATTGACCGGCGCGATC AAGGTCGATGACCAAGTTACGATTGGTGCTAGCAAGGGTACCATTACAATTAATATTAAAAACCAGCCTAAGGCAGATGG TCGTTCGACCGTTTCCTCAAAGTAG Protein sequence : MDNLFTPSAKSVLVLAQEQAKYFKHQAVGTEHLLLALAIEKNGIANKVLQKYAVSEDDIREEIERFTGYGTLSNVGKDTY LPYSPKAKEILSVAGDEAKRLGANKIGTEHLLLAMLSDESILSSRILMNLNLDLGQTRKVVLRKLGVSDAMSKRKGNAAN RGGKKTEGTPTLDSLARDLTQLASEQEMDPVVGRSKEVKRVIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQKIVAGDVP TDMADKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYNDGHVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQT IGATTLNEYQKYIESDAALERRFATVMVNEPTEDEAVEILDGLRPRYEEHHRVTITDEAVDQAVKLSSRYISDRFLPDKA IDLMDEAAAKVRIDQMDQPTKLSKNQDKLAQLREDKETAIEAQDFEQAADIRKQEMQLKQRLDRIEADQDAEVTEGATPH YDLQVTGEDIAQVVAEWTGVPLTQLQKSESERLVNLEKILHERVVGQPEAVSAVARAIRRARSGLKDPSRPIGSFMFLGP TGVGKTELAKALAAAMFGSEDNMIRIDMSEYMERYSTSRLIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDEVEKAHPDV FNILLQILDDGYLTDSKGRKVDFRNTILIMTSNLGATTLRDEKSVGFGATDKANDYNAVAATIRATLKQTFRPEFLNRID ETIVFHSLNKEELHEIVKLMSQEIVDRVAQQGIKIKITPAAIDVVAKAGFDPEYGARPIRRALQTEIEDRLSEELLTGAI KVDDQVTIGASKGTITINIKNQPKADGRSTVSSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003062424.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_003062424.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 2e-149 | 49 |
| clpC | YP_003062424.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG2084 | Protein | 7e-93 | 42 |
