Gene Information

Name : JDM1_0502 (JDM1_0502)
Accession : YP_003062088.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Unknown
Product : phage portal protein, HK97 family
Function : -
COG functional category : S : Function unknown
COG ID : COG4695
EC number : -
Position : 534143 - 535285 bp
Length : 1143 bp
Strand : +
Note : -

DNA sequence :
ATGAGTGTAATTAATAGCTTCTTTGACCTATTTACGCGGCGGAAAGATTCCAGCTTTATTTATGATCTTGATTTGTTTCA
AGACATTAAAAACCGAGCCTACTTAAAACGCATGGCGATTGACACCGTGATTAATTACGTGGGCCGGGCAGTTAGCCAGT
CGGAGTTTCGTGTGATGAACAAGGGGTTACCTGTTAAGGATGCGATGTATTACAAGCTCAATGTCCGACCAAATACTGAC
GAATCGGCTAGTGATTTTTGGCAGCATTTTATCTACCAATTGATTTATTACAACGAGGTGCTAGTGATTCAAGACGACGA
TGGCGATTTATTAATTGCGGATGATTTTAGTCGTCACGAGTTTGCTGTGTATGAAGACGCTTTCGACAACGTCACAGTCA
AAGAATACACGTTTAAGCGTTCCTTCCCGATGTCTGATGTTATTTACTTAAGATACTCCAATGACCAGCTAGAACACTAT
CTGACTGGTTTGTGGGGAGACTATGGCGAGTTGTTTGGGCGGATGTATGAGCTAGAATTGCGTAATAATCAGATTCGCGC
GACTGTTAAGGCTGATATGACGGCTGGTGTTAATGACGGTAAAGCGAACAAACTGCAGATGTTTATTGACAAGATTTTCC
AATCTTTCAGCAAGAACTCCGTTGCGCTGGTACCAATCACTAATGGTTTTGAGTATAACGAAGTGTCAAACGGTGTGGGT
AAGAACCAGACATTTGATGAAAGCAACAGCGTGCTAATGGCATTCATCGATCACGTTGCACGGCTGGTGGGAGTGCCACC
GGCGCTGATACACGGTGAAACTGCCGAAAGTAGCGATAACCAAGAATTATTCAACAAGCAGTGTTTGAGTGCACTATTAA
ATAAGATTCAGTCGGAGCTTAATGCTAAGTCATTCAGCCAGCGAGATTACTTAAAGAATGGCAAACAAGTTGAAGTAATT
GGTATTAATCGACCAACACTAATTGAACTAGCAGAACAAATCGACAAGCTTGGCTCGTCAGGTATGGTTACTCAAAACGA
GGTTCGGTCAGCAGTTGGGTTGCCACCACGTGAAGACGGTGACCAGATAGTGATGACCAAGAATTATACAATGAAAGGTG
GTGAGAATAATGAAGAAGATTAA

Protein sequence :
MSVINSFFDLFTRRKDSSFIYDLDLFQDIKNRAYLKRMAIDTVINYVGRAVSQSEFRVMNKGLPVKDAMYYKLNVRPNTD
ESASDFWQHFIYQLIYYNEVLVIQDDDGDLLIADDFSRHEFAVYEDAFDNVTVKEYTFKRSFPMSDVIYLRYSNDQLEHY
LTGLWGDYGELFGRMYELELRNNQIRATVKADMTAGVNDGKANKLQMFIDKIFQSFSKNSVALVPITNGFEYNEVSNGVG
KNQTFDESNSVLMAFIDHVARLVGVPPALIHGETAESSDNQELFNKQCLSALLNKIQSELNAKSFSQRDYLKNGKQVEVI
GINRPTLIELAEQIDKLGSSGMVTQNEVRSAVGLPPREDGDQIVMTKNYTMKGGENNEED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAV1965 NP_372489.1 hypothetical protein Not tested ¥ÕSa3 Protein 3e-80 46
SA1776 NP_375074.1 hypothetical protein Not tested ¥ÕSa3 Protein 3e-80 46
SAUSA300_1940 YP_494591.1 phage portal protein Not tested ¥ÕSa3 Protein 3e-80 46
SAUSA300_1940 YP_494591.1 phage portal protein Not tested ¥ÕSa3 Protein 3e-80 46
SAOV_1102 YP_005736597.1 Portal protein, phage associated Not tested ¥ÕSa2 Protein 2e-79 46
SAKOR_01944 YP_008492132.1 Portal protein Not tested ¥ÕSa3 Protein 3e-80 46
SH1774 YP_253689.1 hypothetical protein Not tested ¥ÕSh1 Protein 2e-71 43