Gene Information

Name : JDM1_0501 (JDM1_0501)
Accession : YP_003062087.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Unknown
Product : Terminase
Function : -
COG functional category : R : General function prediction only
COG ID : COG4626
EC number : -
Position : 532442 - 534124 bp
Length : 1683 bp
Strand : +
Note : -

DNA sequence :
ATGATTCAACAGAAGTATGTTGAAAGTTACCTACAGGCCTATAAAGACGGCTCTATCAGATTGAATAAACGGCGAATAAA
ACTCGTGGAATTAATAGAAAAGACCGTTCTAACTAACGAAAATTATTATTTTGATGAAGAAAAAATCGAGGACTGTTTAA
CGTTCGCTGATAAGTGGTTTTTCCCATTTACACCCTGGGAGAAGTTCTTAACCGCGTTCGTTTTTTTATATGATCACACC
ACTGAGCGGCGAGCAATTCGGAAGTTCATGGTAGTCGTTGGACGTGGGGCTGGTAAGAACGGCTGGGTATCGGTGATTTC
ATCTTTTCTTTTATCACGACTGCATGGAGTCCGCAATTATAATGGTTCCATTATCGCCAATAGTGAAGAACAGGCCAAAA
CATCAGTTGATGAGATTCACGATGCGGTCGACTTGCATAGTGAGTTGAAAGGCGAATTTTATGCGACTAATTCGCAAGTT
CATTCGAAGTCTACCAACTCGACGTTACGATACCGGACTTCTAACGGGAATACTAAAGATGGCTTGCGTGATGGTTTCGT
TATTTTCGATGAAATTCACGCCTATCAGAATAACCAAAATGTAAAAGTCCATATCTCAGGACTGGGGAAAGTTCGAGACT
CACGAGTTTTCGAGATTGGGTCCCAAGGCTACGTGCGCGATGGCTACTTAGACAAAGAACTAGCGAAAGCTGATGCAATT
TTAAACGGTAAGGCCCCCATTGAATCGATGTTTCCATTTGTTTGCGAGTTGGACAACTTGAAAGAGATGGACGACCCAGC
CAACTGGGAGCTTGCTAACCCATCATTTTCTAAGCCGATGAATGGTTACGCCAAAGACGTTTACCAGGAGACTATGGACG
ACTATAACGACCTGGAACTAGACCCGTCCGGTTATGATGAGTTCGTTATTAAGCGCATGAACTACCAGGTTGAAGACCTA
GAAAAGTCGGTTGCCCCTTATGAGCAAATCAAAGCGACTAACCGTCCGATTCTACTGGACGACTTGCAAGGCATGGAAGC
GATTGGATCGGTGGATTTTGCATCTATTCGCGACTTTACTGCAGACGGGTTGACCATCAAACGAGAAGGCAAGCAGTACT
TTATCAGCCATCAATTTGCCCGCCGTCAATTTGTCGATAAGTTCTATGCGTATTCAGCTAAACCACAAGACCGCCCCCAG
TCTGCTCCTCCTATTGCTGAATGGGAAGAACGCGGACTACTGACCGTGGTGGACACACCAACAATTGACCCGCAAGCGGT
AGTTGACTGGTTCTTGGAACAGCGAAAGCGTTTTATCATTAAGAAAGTTGTCATGGATAATTTCCGGGCGGATTTACTTC
GTAAGTTCTTTGAAGATGCAGGCTTTGAGGTGGTCGTGATTCGGAATCCAACTGCGATTGATGGATTACTAGCCCCGAGG
ATTGAGACAGGGTTTGCCAATCATCAATATATCTGGGGTGACAACCCGTTATTGCGATGGAACACACAGAACGTGCTGGT
TTCGACCGATAGCCACGGTAACAAACGATACGGCAAGAAAGAAGAAATTCGGCGAAAAACTGATGGCTTCAAAGCGTTTG
AATATGGCCAATATCTGGTTGACCAGTTACCCGACTACTCGGTAAATGAATCGCTAGATATGTTGGCAGACATTGATTTC
TAA

Protein sequence :
MIQQKYVESYLQAYKDGSIRLNKRRIKLVELIEKTVLTNENYYFDEEKIEDCLTFADKWFFPFTPWEKFLTAFVFLYDHT
TERRAIRKFMVVVGRGAGKNGWVSVISSFLLSRLHGVRNYNGSIIANSEEQAKTSVDEIHDAVDLHSELKGEFYATNSQV
HSKSTNSTLRYRTSNGNTKDGLRDGFVIFDEIHAYQNNQNVKVHISGLGKVRDSRVFEIGSQGYVRDGYLDKELAKADAI
LNGKAPIESMFPFVCELDNLKEMDDPANWELANPSFSKPMNGYAKDVYQETMDDYNDLELDPSGYDEFVIKRMNYQVEDL
EKSVAPYEQIKATNRPILLDDLQGMEAIGSVDFASIRDFTADGLTIKREGKQYFISHQFARRQFVDKFYAYSAKPQDRPQ
SAPPIAEWEERGLLTVVDTPTIDPQAVVDWFLEQRKRFIIKKVVMDNFRADLLRKFFEDAGFEVVVIRNPTAIDGLLAPR
IETGFANHQYIWGDNPLLRWNTQNVLVSTDSHGNKRYGKKEEIRRKTDGFKAFEYGQYLVDQLPDYSVNESLDMLADIDF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH1775 YP_253690.1 hypothetical protein Not tested ¥ÕSh1 Protein 4e-119 45
SAUSA300_1941 YP_494592.1 phi77 ORF003-like protein, phage terminase, large subunit Not tested ¥ÕSa3 Protein 1e-114 45
SAUSA300_1941 YP_494592.1 phi77 ORF003-like protein, phage terminase, large subunit Not tested ¥ÕSa3 Protein 1e-114 45
SAOV_1101 YP_005736596.1 Phage terminase large subunit Not tested ¥ÕSa2 Protein 2e-114 45
SAKOR_01945 YP_008492133.1 Terminase large subunit Not tested ¥ÕSa3 Protein 1e-114 45
SAV1966 NP_372490.1 phage terminase large subunit Not tested ¥ÕSa3 Protein 1e-114 45
SA1777 NP_375075.1 hypothetical protein Not tested ¥ÕSa3 Protein 1e-114 45