|
Name : lysS (JDM1_0448) Accession : YP_003062034.1 Strain : Lactobacillus plantarum JDM1 Genome accession: NC_012984 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 480979 - 482478 bp Length : 1500 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGGCACGACAAGAACAGACGATGAACGACCAACTGAAGGTTCGTCGCGAAAAAATGGATGAACTGCGTGAAGAGGGGAT TGATCCCTTTGGTCACCGGTTCGAACGGACTGATTTAGCCCAGGACTTGCAAGACAAGTATGGGGATATGGATAAGGACG AGCTAGACGCTAAACAAGTGGTGGCAACCATTGCTGGACGGATGCTAGCTAAGCGTGGTAAGGGTAAAGTCGGTTTTGCT GATATCTGGGATCGCTCAGGTAAGATGCAGTTATACATTCGTAAAGATGTAGTCGGCGAAGATACTTACCATATCTTCAA GCGTTCTGATATTGGTGATTTCCTTGGAATTACCGGCCAAGTTTTTAAGACGGACTTTGGCGAATTAACGATTAAAGTAA CTGGTTTAACGTTCTTATCAAAGGCGTTACGACCATTGCCAGATAAGTTCCATGGGTTACAGAATGTGGAACAGATCTAT CGCCAACGGTATTTGGACTTGATCTCTAACCGCGATAGCTTTGATCGTTTCTTGAAGCGGACGAAGATCATTTCAGCGAT TCGGCATCATTTAGACGATCAAGGCTTCACAGAAGTTGAGACGCCAATGTTGCATAATCAAGCTGGTGGTGCGGCAGCAC GGCCATTTGTGACTCACCACAATGCGTTGAACATTGATCTCTACTTACGAATTGCGTTGGAATTACATTTGAAGCGCCTG ATCGTTGGTGGCATGGAAAAGGTTTATGAGATTGGTCGGGTTTTCCGTAATGAAGGGATGGACCGTGAACATAATCCTGA ATTTACCATGATGGAAACTTATGTCGCCTATTTCGACTTCCATGATGTAATGGCTGAGACGGAAGGTATTTTTAAAGCCG CAGCGCAAGCCGTAACTGACGATGGCATTGTCACTTATCATGATCAAAAAGTTGATTTCAATCAACCATTTAAGCAAATT CACATGGTCGATGCGATTAAAGAAAAGACTGGGATTGATTTCTGGCAACCAATGTCAATTGAAGATGCACAAAAATTGGC GGATGAACATCACGTGAAGTATGAACCATACTGGAAAGTTGGTCATATCATTAATGCGTTCTTTGAAGAATTTGTTGAAG ACACGTTGAATGAACCAACCTTTGTTTATGGTCATCCAGTTGAAATTTCGCCATTAGCTAAGAAGAATGAAGAAGATCCA CGGTTTACTGATCGTTTTGAACTCTTCATCTTAGGTAATGAATACGCCAATGCGTTCAGTGAATTGAATGATCCAATTGA CCAACGGCAACGTTTCGAAGCTCAGGCTGCGGAACGGACTGCTGGTAACGACGAAGCTGAACATATTGATGAAGACTTTG TCGAGGCGTTGGAATACGGGATGCCGCCTACTGGTGGGTTAGGTATCGGGATTGATCGGTTGGTTATGTTAATGACGGAT GCGGACTCGATTCGTGATGTCTTACTTTTCCCAACGATGCGTCCAGAAGAAGATAAATAA Protein sequence : MARQEQTMNDQLKVRREKMDELREEGIDPFGHRFERTDLAQDLQDKYGDMDKDELDAKQVVATIAGRMLAKRGKGKVGFA DIWDRSGKMQLYIRKDVVGEDTYHIFKRSDIGDFLGITGQVFKTDFGELTIKVTGLTFLSKALRPLPDKFHGLQNVEQIY RQRYLDLISNRDSFDRFLKRTKIISAIRHHLDDQGFTEVETPMLHNQAGGAAARPFVTHHNALNIDLYLRIALELHLKRL IVGGMEKVYEIGRVFRNEGMDREHNPEFTMMETYVAYFDFHDVMAETEGIFKAAAQAVTDDGIVTYHDQKVDFNQPFKQI HMVDAIKEKTGIDFWQPMSIEDAQKLADEHHVKYEPYWKVGHIINAFFEEFVEDTLNEPTFVYGHPVEISPLAKKNEEDP RFTDRFELFILGNEYANAFSELNDPIDQRQRFEAQAAERTAGNDEAEHIDEDFVEALEYGMPPTGGLGIGIDRLVMLMTD ADSIRDVLLFPTMRPEEDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-116 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003062034.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-116 | 47 |
