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Name : serS1 (JDM1_0406) Accession : YP_003061992.1 Strain : Lactobacillus plantarum JDM1 Genome accession: NC_012984 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 429086 - 430357 bp Length : 1272 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAAATCCAAAGTTTGTTCGTAATAACCCAGAACTTGTTAAGACTAAGCTCCAGACTCGGAAGGTTGATCCGGCTGA GGTTGATGAATACTTACAGTTAGACCAACAAAACCGGGATGCAATTACCAAGGTTGAAGGATTGAAGAAACAGAAAAACC AGTTGACGGAACAAATTGGGCAAAGTGATCCGCAATCGGAAGCGGGCCAAGCCCTCATTCAACAAGTCAAACAGCTGAAT GGTGATATTAAGAGTACGGAAGCGGCCCAAACGGAAGTAAACGATCGGCTTCATTACTTAGCGATTCGCTTCCCGAATTT ACCTGCCGATGATGTACCAGTCGGTCCTGACGAAGATAGCAATGTTGAGATGCGTAAGCACGGCGATATTCCAACGTTTG ATTTTAAACCTAAGGCGCACTGGGAATTGGGCGAAAGCTTAGGAATCTTGGATTTTGACCGGGCAGCAAAAGTCGCGGGC GCGCGCTTTGTTTATTATAAGGATGCGGGTGCACTCTTAGAACGGGCGGTTTACAGCTTTATGCTAGATCTGCACACACA AAAGCAAGGGTACCATGAAATTATTCCGCCATACTTGGTGAACGCTCAGACAATGTATGGAACTGGGCAATTTCCGAAGT TCAAAGAAGACGTCTACACGGTTGAATCTTCAGGAATGACGTTGATCCCGACGGCTGAAGTACCGCTGACCAATTACTAT GCGAATGAAATCTTATCTGAAGATCAATTGCCAACGTACTTCACGGCGATGACGCCTTGTTATCGCTCCGAAGCTGGGAG TGCGGGGCGTGATACCCGGGGCTTGATTCGTATGCACCAATTTCACAAAGTCGAGATGGTCAAGTACTGTAAACCTGAGA ATTCATACGATGAGCTCGAAAAATTAACGGATAATGCCGAAGAAGTGTTGCACGAATTAGGGCTTGCATACCATGTTATT AAGCTTTCAACGGGGGATACTGGTTTCTCATCAGCCAAGACCTATGATGTGGAAGTATGGATGCCAGAACAAGGCGTTTA TCGGGAAATCAGTTCATGCTCTAACTGCTTGGACTTCCAAGCACGGCGGGCGATGATTCGTTACCGGAAATCTGATGGGA CGGTCGATTACGTCCATACGTTGAATGGTTCTGGACTTGCTGTTGGCCGGACGGTAGCTGCGATTTTGGAAAATTATCAA CAAGCCGATGGCACGGTTAAGATTCCTAAGGTGCTCCAACCTTACATGCATGGTATGACAGAGATAAAATAA Protein sequence : MLNPKFVRNNPELVKTKLQTRKVDPAEVDEYLQLDQQNRDAITKVEGLKKQKNQLTEQIGQSDPQSEAGQALIQQVKQLN GDIKSTEAAQTEVNDRLHYLAIRFPNLPADDVPVGPDEDSNVEMRKHGDIPTFDFKPKAHWELGESLGILDFDRAAKVAG ARFVYYKDAGALLERAVYSFMLDLHTQKQGYHEIIPPYLVNAQTMYGTGQFPKFKEDVYTVESSGMTLIPTAEVPLTNYY ANEILSEDQLPTYFTAMTPCYRSEAGSAGRDTRGLIRMHQFHKVEMVKYCKPENSYDELEKLTDNAEEVLHELGLAYHVI KLSTGDTGFSSAKTYDVEVWMPEQGVYREISSCSNCLDFQARRAMIRYRKSDGTVDYVHTLNGSGLAVGRTVAAILENYQ QADGTVKIPKVLQPYMHGMTEIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-128 | 59 |
