Gene Information

Name : araD (JDM1_2840)
Accession : YP_003064423.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Unknown
Product : L-ribulose-5-phosphate 4-epimerase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0235
EC number : -
Position : 3068360 - 3069088 bp
Length : 729 bp
Strand : -
Note : catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source

DNA sequence :
ATGCTAGAAGCATTAAAACAAGAAGTTTATGAGGCTAACATGCAGCTTCCAAAGCTGGGCCTGGTTACTTTTACCTGGGG
CAATGTCTCGGGCATTGACCGGGAAAAAGGCCTATTCGTGATCAAGCCATCTGGTGTTGATTATGGTGAATTAAAACCAA
GCGATTTAGTCGTTGTTAACTTACAGGGTGAAGTGGTTGACGGTAAACTAAATCCGTCTAGTGATACGCCGACTCATACG
GTGTTATATAACGCTTTTCCTAATATTGGCGGAATTGTCCATACTCATTCGCCATGGGCAGTTGCCTATGCAGCTGCTCA
AATGGATGTGCCAGCTATGAACACGACCCATGCTGATACGTTCTATGGTGACGTGCCGGCCGCGGATGCGCTGACTAAGG
AAGAAATTGAAGCAGATTATGAAGGCAACACGGGTAAAACCATTGTGAAGACGTTCCAAGAACGGGGCCTCGATTATGAA
GCTGTACCAGCCTCATTAGTCAGCCAGCACGGCCCATTTGCTTGGGGACCAACGCCAGCTAAAGCCGTTTACAATGCTAA
AGTGTTGGAAGTGGTTGCCGAAGAAGATTATCATACTGCACAATTGACCCGCGCAAGTAGCGAATTACCACAATATTTAT
TAGATAAGCATTATTTACGTAAGCATGGTGCAAGTGCCTATTATGGTCAAAATAATGCGCATTCTAAGGATCATGCAGTT
CGCAAGTAA

Protein sequence :
MLEALKQEVYEANMQLPKLGLVTFTWGNVSGIDREKGLFVIKPSGVDYGELKPSDLVVVNLQGEVVDGKLNPSSDTPTHT
VLYNAFPNIGGIVHTHSPWAVAYAAAQMDVPAMNTTHADTFYGDVPAADALTKEEIEADYEGNTGKTIVKTFQERGLDYE
AVPASLVSQHGPFAWGPTPAKAVYNAKVLEVVAEEDYHTAQLTRASSELPQYLLDKHYLRKHGASAYYGQNNAHSKDHAV
RK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
araD YP_281517.1 L-ribulose-5-phosphate 4-epimerase Not tested Not named Protein 3e-57 56